Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CACTCCGTCGAGCACCACACGCAGGTGAAGGTGAAGAGGCGGGGCTCGGATATCAAGTTTGTTGCGGCTGTCCTTGCCATTGGAACCGAATGCGACATAGgtgagcactcgtcagctcaaaaggttcagtcctaggcgctacttgcttcttcgaccaccgaggataacggaagccagcaaaagagtcgtttttccgccaggaacaacaaaacaaacgctttctgctttgcag

Basic information

species Selaginella moellendorffii
transcript EFJ08981
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ08981 (Selaginella moellendorffii), 5'ss of exon 1
lower sequence: PP1S176_87V6.1 (Physcomitrella patens), 5'ss of exon 2
CACTCCGTCGAGCACCACACGCAGGTGAAGGTGAAGAGGCGGGGCTCGGATATCAAGTTTGTTGCGGCTGTCCTTGCCATTGGAACCGAATGCGACATAGgtgagc-actcgtcagctcaaaaggttcagtcctaggcgctacttgcttcttcgaccaccgaggataacggaagccagcaaaagagtcgtttttccgccaggaacaacaaaacaaacgctttctgctttgcag
||||| || |||||||| |||||||||||||||||||  ||||| |||||||  ||||   | ||  | || ||||| ||||||||||||||||| |||||| ||   ||   |||  ||  ||  |  || | ||| ||    | |            ||||||     | || | |  |    |||     ||||| |         |     ||                
CACTCAGTGGAGCACCATACGCAGGTGAAGGTGAAGAAACGGGGATCGGATACAAAGTACTTGGCCACAGTGCTTGCGATTGGAACCGAATGCGATATAGgtcagttgctgcccagtgcatgagcgt--gtgcgaggggccgagtacggta--------cgaggacgt--gcaggcggtcatgcggtc-----tccgcaatacgagctgagtgtgac----------------