1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
TCTCTCGTATTTCGGGCAGATTTCATGGCGAGCACGCTGCGCGGGGGGAATCGACTCGAGGTCGTGCGCGCGGTCACCACCGCCGCCGCTGCTGCTCCAGgtagtggcgatgcgagttccagggtttagggtttaagtgatcggcaatggcattgccggattcgtgttgcgctgtgcag
species | Selaginella moellendorffii |
transcript | EFJ07797 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TCGACTCGAGGTCGTGCGCGCGGTCACCACCGCCGCCGCTGCTGCTCCAG CGATCGATCCCACGCTCCAGGACTCGCTCAAGCGTGCCGTGGCCAAGCGGGEST: gi|169055122|gb|FE462998.1|FE462998
genomic: TCGACTCGAGGTCGTGCGCGCGGTCACCACCGCCGCCGCTGCTGCTCCAGgtagtggcga ... cgctgtgcagCGATCGATCCCACGCTGCAGGACTCGCTCAAGCGTGCCGTGGCCAAGCGGG
EST: TCGACTCGAGGTCGTGCGCGCGGTCACCACCGCCGCCGCTGCTGCTCCAG CGATCGATCCCACGCTCCAGGACTCGCTCAAGCGTGCCGTGGCCAAGCGGGEST: gi|169062633|gb|FE470303.1|FE470303
genomic: TCGACTCGAGGTCGTGCGCGCGGTCACCACCGCCGCCGCTGCTGCTCCAGgtagtggcga ... cgctgtgcagCGATCGATCCCACGCTGCAGGACTCGCTCAAGCGTGCCGTGGCCAAGCGGG
EST: TCGACTCGAGGTCGTGCGCGCGGTCACCACCGCCGCCGCTGCTGCTCCAG CGATCGATCCCACGCTGCAGGACTCGCTCAAGCGTGCCGTGGCCAAGCGGGEST: gi|169102265|gb|FE506528.1|FE506528
genomic: TCGACTCGAGGTCGTGCGCGCGGTCACCACCGCCGCCGCTGCTGCTCCAGgtagtggcga ... cgctgtgcagCGATCGATCCCACGCTGCAGGACTCGCTCAAGCGTGCCGTGGCCAAGCGGG
EST: TCGACTCGAGGTCGTGCGCGCGGTCACCACCGCCGCCGCTGCTGCTCCAG CGATCGATCCCACGCTCCAGGACTCGCTCAAGCGTGCCGTGGCCAAGCGGGEST: gi|169049216|gb|FE459492.1|FE459492
genomic: TCGACTCGAGGTCGTGCGCGCGGTCACCACCGCCGCCGCTGCTGCTCCAGgtagtggcga ... cgctgtgcagCGATCGATCCCACGCTGCAGGACTCGCTCAAGCGTGCCGTGGCCAAGCGGG
EST: TCGACTCGAGGTCGTGCGCGCGGTCACCACCGCCGCCGCTGCTGCTCCAG CGATCGATCCCACGCTGCAGGACTCGCTCAAGCGTGCCGTGGCCAAGCGGGEST: gi|169049585|gb|FE457729.1|FE457729
genomic: TCGACTCGAGGTCGTGCGCGCGGTCACCACCGCCGCCGCTGCTGCTCCAGgtagtggcga ... cgctgtgcagCGATCGATCCCACGCTGCAGGACTCGCTCAAGCGTGCCGTGGCCAAGCGGG
EST: TCGACTCGAGGTCGTGCGCGCGGTCACCACCGCCGCCGCTGCTGCTCCAG CGATCGATCCCACGCTGCAGGACTCGCTCAAGCGTGCCGTGGCCAAGCGGGEST: gi|169044392|gb|FE453330.1|FE453330
genomic: TCGACTCGAGGTCGTGCGCGCGGTCACCACCGCCGCCGCTGCTGCTCCAGgtagtggcga ... cgctgtgcagCGATCGATCCCACGCTGCAGGACTCGCTCAAGCGTGCCGTGGCCAAGCGGG
EST: TCGACTCGAGGTCGTGCGCGCGGTCACCACCGCCGCCGCTGCTGCTCCAG CGATCGATCCCACGCTCCAGGACTCGCTCAAGCGTGCCGTGGCCAAGCGGGEST: gi|169076720|gb|FE485555.1|FE485555
genomic: TCGACTCGAGGTCGTGCGCGCGGTCACCACCGCCGCCGCTGCTGCTCCAGgtagtggcga ... cgctgtgcagCGATCGATCCCACGCTGCAGGACTCGCTCAAGCGTGCCGTGGCCAAGCGGG
EST: TCGACTCGAGGTCGTGCGCGCGGTCACCACCGCCGCCGCTGCTGCTCCAG CGATCGATCCCACGCTGCAGGACTCGCTCAAGCGTGCCGTGGCCAAGCGGGEST: gi|169036384|gb|FE445749.1|FE445749
genomic: TCGACTCGAGGTCGTGCGCGCGGTCACCACCGCCGCCGCTGCTGCTCCAGgtagtggcga ... cgctgtgcagCGATCGATCCCACGCTGCAGGACTCGCTCAAGCGTGCCGTGGCCAAGCGGG
EST: TCGACTCGAGGTCGTGCGCGCGGTCACCACCGCCGCCGCTGCTGCTCCAG CGATCGATCCCACGCTGCAGGACTCGCTCAAGCGTGCCGTGGCCAAGCGGG
genomic: TCGACTCGAGGTCGTGCGCGCGGTCACCACCGCCGCCGCTGCTGCTCCAGgtagtggcga ... cgctgtgcagCGATCGATCCCACGCTGCAGGACTCGCTCAAGCGTGCCGTGGCCAAGCGGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCTCTCGTATTTCGGGCAGATTTCATGGCGAGCACGCTGCGCGGGGGGAATCGACTCGAGGTCGTGCGCGCGGTCACCACCGCCGCCGCTGCTGCTCCAGgtagtggcgatgcgagttccagggtttagggtttaagtgatcggcaatggcattgccggattcgtgttgcgctgtgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT