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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTGATCAGAAGTTAAGAGTGTGTGATATTTGCGGGGCATTTTTGAGCATCTATGACAGgttcgtactggactgaaattacttcatattggcttgtcctcaaacatttagaaatctcaacttagtacacgtcatatgctcttcatcgaggaagtgaacg...

Basic information

species Physcomitrella patens
transcript PP1S88_36V6.2
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S88_36V6.1 (Physcomitrella patens), 5'ss of exon 9
lower sequence: AT5G17440.1 (Arabidopsis thaliana), 5'ss of exon 9
GCTGATCAGAAGTTAAGAGTGTGTGATATTTGCGGGGCATTTTTGAGCATCTATGACAGgttcgtactgg--actgaaattacttcatattggcttgtcctcaaacatttagaaatctcaacttagtacacgtcatatgctcttcatcgaggaagtgaacg
 | || |||||| |  |  | ||||| || ||||| |||||||||||| |||||||||||||     |    ||| |||||  || || ||   | || |     | |||   ||    | ||    | |  | ||  | |    |  |    | |     
ACAGACCAGAAGCTGCGTCTATGTGACATATGCGGAGCATTTTTGAGCGTCTATGACAGgttaactttaattacttaaatttgtttatgttttatggttccgtggcgtttcataagaa-agctagaaatagattattgggttgcaagtggttcattattt-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208356042|gb|DC957286.1|DC957286
EST:     AAGTTAAGAGTGTGTGATATTTGCGGGGCATTTTTGAGCATCTATGACAG                         TGACCGTCGCCTGGCGGACCATTTTGGAGGGAAGCTACATTTGGGTTACAT
genomic: AAGTTAAGAGTGTGTGATATTTGCGGGGCATTTTTGAGCATCTATGACAGgttcgtactg ... atactttcagTGACCGTCGCCTGGCGGACCATTTTGGAGGGAAGCTACATTTGGGTTACAT
EST: gi|162204260|gb|FC379733.1|FC379733
EST:     AAGTTAAGAGTGTGTGATATTTGCGGGGCATTTTTGAGCATCTATGACAG                         TGACCGTCGCCTGGCGGACCATTTTGGAGGGAAGCTACATTTGGGTTACAT
genomic: AAGTTAAGAGTGTGTGATATTTGCGGGGCATTTTTGAGCATCTATGACAGgttcgtactg ... atactttcagTGACCGTCGCCTGGCGGACCATTTTGGAGGGAAGCTACATTTGGGTTACAT