1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
TGGATGTCTTGCTGCTGACGTCCTTGGAATTCCGAACAGCGACGTGCAGCAAGCAAGGATGTCTGAGAGTGCAGGATGTAGTCGTGGAGAACCAAATCAGgtcacacatccgatttcgtttgttgaatgctcttcaccacgccctaatctatccttagtcaggatatgctgcctcgagtcttgtcttgcttgctgatgtctaagaacgcatgtgcacag
species | Physcomitrella patens |
transcript | PP1S80_41V6.1 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: AAGCAAGGATGTCTGAGAGTGCAGGATGTAGTCGTGGAGAACCAAATCAG TTATGGCGATTGACACTTGACGGGGAACTTCGGAACGATTACACTGGTTTCEST: gi|162186700|gb|FC362736.1|FC362736
genomic: AAGCAAGGATGTCTGAGAGTGCAGGATGTAGTCGTGGAGAACCAAATCAGgtcacacatc ... atgtgcacagTTATGGCGATTGACACTTGACGGGGAACTTCGGAACGATTACACTGGTTTC
EST: AAGCAAGGATGTCTGAGAGTGCAGGATGTAGTCGTGGAGAACCAAATCAG TTATGGCGATTGACACTTGACGGGGAACTTCGGAACGATTACACTGGTTTCEST: gi|67724729|gb|BJ974988.1|BJ974988
genomic: AAGCAAGGATGTCTGAGAGTGCAGGATGTAGTCGTGGAGAACCAAATCAGgtcacacatc ... atgtgcacagTTATGGCGATTGACACTTGACGGGGAACTTCGGAACGATTACACTGGTTTC
EST: AAGCAAGGATGTCTGAGAGTGCAGGATGTAGTCGTGGAGAACCAAATCAG TTATGGCGATTGACACTTGACGGGGAATTTCGGAACGATTACACTGGTTTCEST: gi|162262832|gb|FC439992.1|FC439992
genomic: AAGCAAGGATGTCTGAGAGTGCAGGATGTAGTCGTGGAGAACCAAATCAGgtcacacatc ... atgtgcacagTTATGGCGATTGACACTTGACGGGGAACTTCGGAACGATTACACTGGTTTC
EST: AAGCAAGGATGTCTGAGAGTGCAGGATGTAGTCGTGGAGAACCAAATCAG TTATGGCGATTGACACTTGACGGGGAACTTCGGAACGATTACACTGGTTTCEST: gi|208379427|gb|DC922971.1|DC922971
genomic: AAGCAAGGATGTCTGAGAGTGCAGGATGTAGTCGTGGAGAACCAAATCAGgtcacacatc ... atgtgcacagTTATGGCGATTGACACTTGACGGGGAACTTCGGAACGATTACACTGGTTTC
EST: AAGCAAGGATGTCTGAGAGTGCAGGATGTAGTCGTGGAGAACCAAATCAG TTATGGCGATTGACACTTGACGGGGAACTTCGGAACGATTACACTGGTTTCEST: gi|67723823|gb|BJ974082.1|BJ974082
genomic: AAGCAAGGATGTCTGAGAGTGCAGGATGTAGTCGTGGAGAACCAAATCAGgtcacacatc ... atgtgcacagTTATGGCGATTGACACTTGACGGGGAACTTCGGAACGATTACACTGGTTTC
EST: AAGCAAGGATGTCTGAGAGTGCAGGATGTAGTCGTGGAGAACCAAATCAG TTATGGCGATTGACACTCGACGGGGAACTTCGGAACGATTACACTGGTTTC
genomic: AAGCAAGGATGTCTGAGAGTGCAGGATGTAGTCGTGGAGAACCAAATCAGgtcacacatc ... atgtgcacagTTATGGCGATTGACACTTGACGGGGAACTTCGGAACGATTACACTGGTTTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGGATGTCTTGCTGCTGACGTCCTTGGAATTCCGAACAGCGACGTGCAGCAAGCAAGGATGTCTGAGAGTGCAGGATGTAGTCGTGGAGAACCAAATCAGgtcacacatccgatttcgtttgttgaatgctcttcaccacgccctaatctatccttagtcaggatatgctgcctcgagtcttgtcttgcttgctgatgtctaagaacgcatgtgcacag
- - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA