1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GGGACATCTTTCAGTCTCAACCGAGGTGTTCGAGGTGGCGCCTTCTCTTTACATGGTTGAGTTACAGAAGAACAGTGGTGATACATTGGAGTATAACCATgtaagattccatgtagtgcactttctgtgctttgatcagcaaattgctcgatgcatgtgctagttgtagaatctctgagatcacagctttcttaattatg...
species | Physcomitrella patens |
transcript | PP1S79_209V6.1 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: ACATGGTTGAGTTACAGAAGAACAGTGGTGATACATTGGAGTATAACCAT TTTTACAAGAATCTTTCCAAGGGCCTAAAAGACATAGTGTGGAAAGCAGACEST: gi|37850622|gb|BJ608630.1|BJ608630
genomic: ACATGGTTGAGTTACAGAAGAACAGTGGTGATACATTGGAGTATAACCATgtaagattcc ... actcttgcagTTTTACAAGAATCTTTCCAAGGGCCTAAAAGACATAGTGTGGAAAGCAGAC
EST: ACATGGTTGAGTTACAGAAGAACAGTGGTGATACATTGGAGTATAACCAT TTTTACAAGAATCTTTCCAAGGGCCTAAAAGACATAGTGTGGAAAGCAGACEST: gi|67693058|gb|BJ953291.1|BJ953291
genomic: ACATGGTTGAGTTACAGAAGAACAGTGGTGATACATTGGAGTATAACCATgtaagattcc ... actcttgcagTTTTACAAGAATCTTTCCAAGGGCCTAAAAGACATAGTGTGGAAAGCAGAC
EST: ACATGGTTGAGTTACAGAAGAACAGTGGTGATACATTGGAGTATAACCAT TTTTACAAGAATCTTTCCAAGGGCCTAAAAGACATAGTGTGGAAAGCAGACEST: gi|162187482|gb|FC362704.1|FC362704
genomic: ACATGGTTGAGTTACAGAAGAACAGTGGTGATACATTGGAGTATAACCATgtaagattcc ... actcttgcagTTTTACAAGAATCTTTCCAAGGGCCTAAAAGACATAGTGTGGAAAGCAGAC
EST: ACATGGTTGAGTTACAGAAGAACAGTGGTGATACATTGGAGTATAACCAT TTTTACAAGAATCTTTCCAAGGGCCTAAAAGACATAGTGTGGAAAGCAGACEST: gi|162257373|gb|FC433456.1|FC433456
genomic: ACATGGTTGAGTTACAGAAGAACAGTGGTGATACATTGGAGTATAACCATgtaagattcc ... actcttgcagTTTTACAAGAATCTTTCCAAGGGCCTAAAAGACATAGTGTGGAAAGCAGAC
EST: ACATGGTTGAGTTACAGAAGAACAGTGGTGATACATTGGAGTATAACCAT TTTTACAAGAATCTTTCCAAGGGCCTAAAAGACATAGTGTGGAAAGCAGAC
genomic: ACATGGTTGAGTTACAGAAGAACAGTGGTGATACATTGGAGTATAACCATgtaagattcc ... actcttgcagTTTTACAAGAATCTTTCCAAGGGCCTAAAAGACATAGTGTGGAAAGCAGAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGGACATCTTTCAGTCTCAACCGAGGTGTTCGAGGTGGCGCCTTCTCTTTACATGGTTGAGTTACAGAAGAACAGTGGTGATACATTGGAGTATAACCATgtaagattccatgtagtgcactttctgtgctttgatcagcaaattgctcgatgcatgtgctagttgtagaatctctgagatcacagctttcttaattatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG