1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
AGATTTGACCGACTCAACTGTGCTCCGCAATCTTGGTGTTGGACTTGGCCATTCAGTGCTTGCCTATGAGAGCACGCTGAAGGGAATCAGAAAACTGCAGgtattcagtcttctcttttagtttgctggattgaaacgtagattgtgttgtatttgaggtggtttcttaatatctataaactcaaattagatgccactct...
species | Physcomitrella patens |
transcript | PP1S78_3V6.1 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: ATTCAGTGCTTGCCTATGAGAGCACGCTGAAGGGAATCAGAAAACTGCAG GTAAATGAGGCACGAATTCAAGAAGATTTGGCTGAATGCTGGGAGGTTTTGEST: gi|37845353|gb|BJ603361.1|BJ603361
genomic: ATTCAGTGCTTGCCTATGAGAGCACGCTGAAGGGAATCAGAAAACTGCAGgtattcagtc ... ctatttgcagGTAAATGAGGCACGAATTCAAGAAGATTTGGCTGAATGCTGGGAGGTTTTG
EST: ATCAGAAAACTGCAG GTAAATGAGGCACGAATTCAAGAAGATTTGGCTGAATGCTGGGAGGTTTTGEST: gi|162195992|gb|FC372683.1|FC372683
genomic: ATCAGAAAACTGCAGgtattcagtc ... ctatttgcagGTAAATGAGGCACGAATTCAAGAAGATTTGGCTGAATGCTGGGAGGTTTTG
EST: ATTCAGTGCTTGCCTATGAGAGCACGCTGAAGGGAATCAGAAAACTGCAG GTAAATGAGGCACGAATTCAAGAAGATTTGGCTGAATGCTGGGAGGTTTTGEST: gi|162231111|gb|FC406222.1|FC406222
genomic: ATTCAGTGCTTGCCTATGAGAGCACGCTGAAGGGAATCAGAAAACTGCAGgtattcagtc ... ctatttgcagGTAAATGAGGCACGAATTCAAGAAGATTTGGCTGAATGCTGGGAGGTTTTG
EST: ATTCAGTGCTTGCCTATGAGAGCACGCTGAAGGGAATCAGAAAACTGCAG GTAAATGAGGCACGAATTCAAGAAGATTTGGCTGAATGCTGGGAGGTTTTGEST: gi|162167458|gb|FC343668.1|FC343668
genomic: ATTCAGTGCTTGCCTATGAGAGCACGCTGAAGGGAATCAGAAAACTGCAGgtattcagtc ... ctatttgcagGTAAATGAGGCACGAATTCAAGAAGATTTGGCTGAATGCTGGGAGGTTTTG
EST: ATTCAGTGCTTGCCTATGAGAGCACGCTGAAGGGAATCAGAAAACTGCAG GTAAATGAGGCACGAATTCAAGAAGATTTGGCTGAATGCTGGGAGGTTTTGEST: gi|162195993|gb|FC372684.1|FC372684
genomic: ATTCAGTGCTTGCCTATGAGAGCACGCTGAAGGGAATCAGAAAACTGCAGgtattcagtc ... ctatttgcagGTAAATGAGGCACGAATTCAAGAAGATTTGGCTGAATGCTGGGAGGTTTTG
EST: ATTCAGTGCTTGCCTATGAGAGCACGCTGAAGGGAATCAGAAAACTGCAG GTAAATGAGGCACGAATTCAAGAAGATTTGGCTGAATGCTGGGAGGTTTTG
genomic: ATTCAGTGCTTGCCTATGAGAGCACGCTGAAGGGAATCAGAAAACTGCAGgtattcagtc ... ctatttgcagGTAAATGAGGCACGAATTCAAGAAGATTTGGCTGAATGCTGGGAGGTTTTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGATTTGACCGACTCAACTGTGCTCCGCAATCTTGGTGTTGGACTTGGCCATTCAGTGCTTGCCTATGAGAGCACGCTGAAGGGAATCAGAAAACTGCAGgtattcagtcttctcttttagtttgctggattgaaacgtagattgtgttgtatttgaggtggtttcttaatatctataaactcaaattagatgccactct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG