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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTTCAGAGTGGCTATACATAGTACCTTGGGGTATTGGGAAAACTTTGTTGTGGCTGACAGAGCGATACCAAAAACCGTTGCTGTACATCACAGAAAATGgtgacttgcaatcattctttcctcattgtacaaatgcctgaaagactcccaaattttgtcttcaatgagttgtgttttcaagctgcagcgatgttttgaaactagcagtttcttcatcttcaatcag

Basic information

species Physcomitrella patens
transcript PP1S76_8V6.1
intron # 9
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37847431|gb|BJ605439.1|BJ605439
EST:     GTGGCTGACAGAGCGATACCAAAAACCGTTGCTGTACATCACAGAAAATG                         GTATGGATGACTCGGACGACCTCGGCAACACCAAGCTTGCGACAGATTTTC
genomic: GTGGCTGACAGAGCGATACCAAAAACCGTTGCTGTACATCACAGAAAATGgtgacttgca ... cttcaatcagGTATGGATGACTCGGACGACCTCGGCAACACCAAGCTTGCGACAGATTTTC
EST: gi|37849841|gb|BJ607849.1|BJ607849
EST:     GTGGCTGACAGAGCGATACCAAAAACCGTTGCTGTACATCACAGAAAATG                         GTATGGATGACTCGGACGACCTCGGCAACACCAAGCTTGCGACAGATTTTC
genomic: GTGGCTGACAGAGCGATACCAAAAACCGTTGCTGTACATCACAGAAAATGgtgacttgca ... cttcaatcagGTATGGATGACTCGGACGACCTCGGCAACACCAAGCTTGCGACAGATTTTC
EST: gi|37853675|gb|BJ611683.1|BJ611683
EST:     GTGGCTGACAGAGCGATACCAAAAACCGTTGCTGTACATCACAGAAAATG                         GTATGGATGACTCGGACGACCTCGGCAACACCAAGCTTGCGACAGATTTTC
genomic: GTGGCTGACAGAGCGATACCAAAAACCGTTGCTGTACATCACAGAAAATGgtgacttgca ... cttcaatcagGTATGGATGACTCGGACGACCTCGGCAACACCAAGCTTGCGACAGATTTTC
EST: gi|37838648|gb|BJ596656.1|BJ596656
EST:     GTGGCTGACAGAGCGATACCAAAAACCGTTGCTGTACATCACAGAAAATG                         GTATGGATGACTCGGACGACCTCGGCAACACCAAGCTTGCGACAGATTTTC
genomic: GTGGCTGACAGAGCGATACCAAAAACCGTTGCTGTACATCACAGAAAATGgtgacttgca ... cttcaatcagGTATGGATGACTCGGACGACCTCGGCAACACCAAGCTTGCGACAGATTTTC
EST: gi|162216227|gb|FC392644.1|FC392644
EST:     GTGGCTGACAGAGCGATACCAAAAACCGTTGCTGTACATCACAGAAAATG                         GTATGGATGACTCGGACGACCTCGGCAACACCAAGCTTGCGACAGATTTTC
genomic: GTGGCTGACAGAGCGATACCAAAAACCGTTGCTGTACATCACAGAAAATGgtgacttgca ... cttcaatcagGTATGGATGACTCGGACGACCTCGGCAACACCAAGCTTGCGACAGATTTTC
EST: gi|162192369|gb|FC368583.1|FC368583
EST:     GTGGCTGACAGAGCGATACCAAAAACCGTTGCTGTACATCACAGAAAATG                         GTATGGATGACTCGGACGACCTCGGCAACACCAAGCTTGCGACAGATTTTC
genomic: GTGGCTGACAGAGCGATACCAAAAACCGTTGCTGTACATCACAGAAAATGgtgacttgca ... cttcaatcagGTATGGATGACTCGGACGACCTCGGCAACACCAAGCTTGCGACAGATTTTC
EST: gi|162222484|gb|FC397205.1|FC397205
EST:     GTGGCTGACAGAGCGATACCAAAAACCGTTGCTGTACATCACAGAAAATG                         GTATGGATGACTCGGACGACCTCGGCAACACCAAGCTTGCGACAGATTTTC
genomic: GTGGCTGACAGAGCGATACCAAAAACCGTTGCTGTACATCACAGAAAATGgtgacttgca ... cttcaatcagGTATGGATGACTCGGACGACCTCGGCAACACCAAGCTTGCGACAGATTTTC
EST: gi|18332625|gb|BJ164638.1|BJ164638
EST:     GTGGCTGACAGAGCGATACCAAAAACCGTTGCTGTACATCACAGAAAATG                         GTATGGATGACTCGGACGACCTCGGCAACACCAAGCTTGCGACAGATTTTC
genomic: GTGGCTGACAGAGCGATACCAAAAACCGTTGCTGTACATCACAGAAAATGgtgacttgca ... cttcaatcagGTATGGATGACTCGGACGACCTCGGCAACACCAAGCTTGCGACAGATTTTC
EST: gi|67724750|gb|BJ975009.1|BJ975009
EST:     GTGGCTGACAGAGCGATACCAAAAACCGTTGCTGTACATCACAGAAAATG                         GTATGGATGACTCGGACGACCTCGGCAACACCAAGCTTGCGACAGATTTTC
genomic: GTGGCTGACAGAGCGATACCAAAAACCGTTGCTGTACATCACAGAAAATGgtgacttgca ... cttcaatcagGTATGGATGACTCGGACGACCTCGGCAACACCAAGCTTGCGACAGATTTTC
EST: gi|37848981|gb|BJ606989.1|BJ606989
EST:     GTGGCTGACAGAGCGATACCAAAAACCGTTGCTGTACATCACAGAAAATG                         GTATGGATGACTCGGACGACCTCGGCAACACCAAGCTTGCGACAGATTTTC
genomic: GTGGCTGACAGAGCGATACCAAAAACCGTTGCTGTACATCACAGAAAATGgtgacttgca ... cttcaatcagGTATGGATGACTCGGACGACCTCGGCAACACCAAGCTTGCGACAGATTTTC
EST: gi|162175399|gb|FC352325.1|FC352325
EST:     GTGGCTGACAGAGCGATACCAAAAACCGTTGCTGTACATCACAGAAAATG                         GTATGGATGACTCGGACGACCTCGGCAACACCAAGCTTGCGACAGATTTTC
genomic: GTGGCTGACAGAGCGATACCAAAAACCGTTGCTGTACATCACAGAAAATGgtgacttgca ... cttcaatcagGTATGGATGACTCGGACGACCTCGGCAACACCAAGCTTGCGACAGATTTTC
EST: gi|37830105|gb|BJ588117.1|BJ588117
EST:     GTGGCTGACAGAGCGATACCAAAAACCGTTGCTGTACATCACAGAAAATG                         GTATGGATGACTCGGACGACCTCGGCAACACCAAGCTTGCGACAGATTTTC
genomic: GTGGCTGACAGAGCGATACCAAAAACCGTTGCTGTACATCACAGAAAATGgtgacttgca ... cttcaatcagGTATGGATGACTCGGACGACCTCGGCAACACCAAGCTTGCGACAGATTTTC
EST: gi|162258356|gb|FC434283.1|FC434283
EST:     GTGGCTGACAGAGCGATACCAAAAACCGTTGCTGTACATCACAGAAAATG                         GTATGGATGACTCGGACGACCTCGGCAACACCAAGCTTGCGACAGATTTTC
genomic: GTGGCTGACAGAGCGATACCAAAAACCGTTGCTGTACATCACAGAAAATGgtgacttgca ... cttcaatcagGTATGGATGACTCGGACGACCTCGGCAACACCAAGCTTGCGACAGATTTTC
EST: gi|37849544|gb|BJ607552.1|BJ607552
EST:     GTGGCTGACAGAGCGATACCAAAAACCGTTGCTGTACATCACAGAAAATG                         GTATGGATGACTCGGACGACCTCGGCAACACCAAGCTTGCGACAGATTTTC
genomic: GTGGCTGACAGAGCGATACCAAAAACCGTTGCTGTACATCACAGAAAATGgtgacttgca ... cttcaatcagGTATGGATGACTCGGACGACCTCGGCAACACCAAGCTTGCGACAGATTTTC
EST: gi|18340077|gb|BJ172105.1|BJ172105
EST:     GTGGCTGACAGAGCGATACCAAAAACCGTTGCTGTACATCACAGAAAATG                         GTATGGATGACTCGGACGACCTCGGCAACACCAAGCTTGCGACAGATTTTC
genomic: GTGGCTGACAGAGCGATACCAAAAACCGTTGCTGTACATCACAGAAAATGgtgacttgca ... cttcaatcagGTATGGATGACTCGGACGACCTCGGCAACACCAAGCTTGCGACAGATTTTC
EST: gi|37844589|gb|BJ602597.1|BJ602597
EST:     GTGGCTGACAGAGCGATACCAAAAACCGTTGCTGTACATCACAGAAAATG                         GTATGGATGACTCGGACGACCTCGGCAACACCAAGCTTGCGACAGATTTTC
genomic: GTGGCTGACAGAGCGATACCAAAAACCGTTGCTGTACATCACAGAAAATGgtgacttgca ... cttcaatcagGTATGGATGACTCGGACGACCTCGGCAACACCAAGCTTGCGACAGATTTTC
EST: gi|208351275|gb|DC921554.1|DC921554
EST:     GTGGCTGACAGAGCGATACCAAAAACCGTTGCTGTACATCACAGAAAATG                         GTATGGATGACTCGGACGACCTCGGCAACACCAAGTTTGCGACAGATTTTN
genomic: GTGGCTGACAGAGCGATACCAAAAACCGTTGCTGTACATCACAGAAAATGgtgacttgca ... cttcaatcagGTATGGATGACTCGGACGACCTCGGCAACACCAAGCTTGCGACAGATTTTC
EST: gi|208398631|gb|DC920526.1|DC920526
EST:     GTGGCTGACAGAGCGATACCAAAAACCGTTGCTGTACATCACAGAAAATG                         GTATGGATGACTCGGACGACCTCGGCAACACCAAGCTTGCGACAGATTTTC
genomic: GTGGCTGACAGAGCGATACCAAAAACCGTTGCTGTACATCACAGAAAATGgtgacttgca ... cttcaatcagGTATGGATGACTCGGACGACCTCGGCAACACCAAGCTTGCGACAGATTTTC
EST: gi|162183971|gb|FC359341.1|FC359341
EST:     GTGGCTGACAGAGCGATACCAAAAACCGTTGCTGTACATCACAGAAAATG                         GTATGGATGACTCGGACGACCTCGGCAACACCAAGCTTGCGACAGATTTTC
genomic: GTGGCTGACAGAGCGATACCAAAAACCGTTGCTGTACATCACAGAAAATGgtgacttgca ... cttcaatcagGTATGGATGACTCGGACGACCTCGGCAACACCAAGCTTGCGACAGATTTTC
EST: gi|67694850|gb|BJ955083.1|BJ955083
EST:     GTGGCTGACAGAGCGATACCAAAAACCGTTGCTGTACATCACAGAAAATG                         GTATGGATGACTCGGACGACCTCGGCAACACCAAGCTTGCGACAGATTTTC
genomic: GTGGCTGACAGAGCGATACCAAAAACCGTTGCTGTACATCACAGAAAATGgtgacttgca ... cttcaatcagGTATGGATGACTCGGACGACCTCGGCAACACCAAGCTTGCGACAGATTTTC
EST: gi|37850732|gb|BJ608740.1|BJ608740
EST:     GTGACTGACAGAGCGATACCAAAAACCGTTGCTGTACATCACAGAAAATG                         GTATGGATGACTCGGACGACCTCGGCAACACCAAGCTTGCGACAGATTTTC
genomic: GTGGCTGACAGAGCGATACCAAAAACCGTTGCTGTACATCACAGAAAATGgtgacttgca ... cttcaatcagGTATGGATGACTCGGACGACCTCGGCAACACCAAGCTTGCGACAGATTTTC
EST: gi|67727273|gb|BJ977532.1|BJ977532
EST:     GTGGCTGACAGAGCGATACCAAAAACCGTTGCTGTACATCACAGAAAATG                         GTATGGATGACTCGGACGACCTCGGCAACACCAAGCTTGCGACAGATTTTC
genomic: GTGGCTGACAGAGCGATACCAAAAACCGTTGCTGTACATCACAGAAAATGgtgacttgca ... cttcaatcagGTATGGATGACTCGGACGACCTCGGCAACACCAAGCTTGCGACAGATTTTC
EST: gi|208348147|gb|DC920938.1|DC920938
EST:     GTGGCTGACAGAGCGATACCAAAAACCGTTGCTGTACATCACAGAAAATG                         GTATGGATGACTCGGACGACCTCGGCAACACCAAGCTTGCGACAGATTTTC
genomic: GTGGCTGACAGAGCGATACCAAAAACCGTTGCTGTACATCACAGAAAATGgtgacttgca ... cttcaatcagGTATGGATGACTCGGACGACCTCGGCAACACCAAGCTTGCGACAGATTTTC
EST: gi|162224508|gb|FC399884.1|FC399884
EST:     GTGGCTGACAGAGCGATACCAAAAACCGTTGCTGTACATCACAGAAAATG                         GTATGGATGACTCGGACGACCTCGGCAACACCAAGCTTGCGACAGATTTTC
genomic: GTGGCTGACAGAGCGATACCAAAAACCGTTGCTGTACATCACAGAAAATGgtgacttgca ... cttcaatcagGTATGGATGACTCGGACGACCTCGGCAACACCAAGCTTGCGACAGATTTTC
EST: gi|37824942|gb|BJ583008.1|BJ583008
EST:     GTGGCTGACAGAGCGATACCAAAAACCGTTGCTGTACATCACAGAAAATG                         GTATGGATGACTCGGACGACCTCGGCAACACCAAGCTTGCGACAGATTTTC
genomic: GTGGCTGACAGAGCGATACCAAAAACCGTTGCTGTACATCACAGAAAATGgtgacttgca ... cttcaatcagGTATGGATGACTCGGACGACCTCGGCAACACCAAGCTTGCGACAGATTTTC
EST: gi|37850796|gb|BJ608804.1|BJ608804
EST:     GTGGCTGACAGAGCGATACCAAAAACCGTTGCTGTACATCACAGAAAATG                         GTATGGATGACTCGGACGACCTCGGCAACACCAAGCTTGCGACAGATTTTC
genomic: GTGGCTGACAGAGCGATACCAAAAACCGTTGCTGTACATCACAGAAAATGgtgacttgca ... cttcaatcagGTATGGATGACTCGGACGACCTCGGCAACACCAAGCTTGCGACAGATTTTC
EST: gi|208356146|gb|DC946236.1|DC946236
EST:     GTGGCTGACAGAGCGATACCAAAAACCGTTGCTGTACATCACAGAAAATG                         GTATGGATGACTCGGACGACCTCGGCAACACCAAGCTTGCGACAGATTTTC
genomic: GTGGCTGACAGAGCGATACCAAAAACCGTTGCTGTACATCACAGAAAATGgtgacttgca ... cttcaatcagGTATGGATGACTCGGACGACCTCGGCAACACCAAGCTTGCGACAGATTTTC
EST: gi|37841120|gb|BJ599128.1|BJ599128
EST:     GTGGCTGACAGAGCGATACCAAAAACCGTTGCTGTACATCACAGAAAATG                         GTATGGATGACTCGGACGACCTCGGCAACACCAAGCTTGCGACAGATTTTC
genomic: GTGGCTGACAGAGCGATACCAAAAACCGTTGCTGTACATCACAGAAAATGgtgacttgca ... cttcaatcagGTATGGATGACTCGGACGACCTCGGCAACACCAAGCTTGCGACAGATTTTC