1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
TGCGCAATCCAAGCTGGGCTTGACAGTTTCACTCATCGTCTTGGCCGGTCTCTCTATTCTTGCCCTGGGCAGCTACGTTGTCTACAAATACCGCCTGCGGgtactcatcacaccttctcgtttgataggtcttacatggccaagtttatcattcatattttgtgagtttatatgttgtgagtattttcagtgaatcgtgagcatggatgctatggtgcag
species | Physcomitrella patens |
transcript | PP1S76_79V6.1 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: TCTCTATTCTTGCCCTGGGCAGCTACGTTGTCTACAAATACCGCCTGCGG ACATACATGGACTCAGAGATTCGAGCGATTATGGCGCAGTACATGCCTTTGEST: gi|37830104|gb|BJ588116.1|BJ588116
genomic: TCTCTATTCTTGCCCTGGGCAGCTACGTTGTCTACAAATACCGCCTGCGGgtactcatca ... tatggtgcagACATACATGGACTCAGAGATTCGAGCGATTATGGCGCAGTACATGCCTTTG
EST: TCTCTATTCTTGCCCTGGGCAGCTACGTTGTCTACAAATACCGCCTGCGG ACATACATGGACTCAGAGATTCGAGCGATTATGGCGCAGTACATGCCTTTGEST: gi|37831638|gb|BJ589650.1|BJ589650
genomic: TCTCTATTCTTGCCCTGGGCAGCTACGTTGTCTACAAATACCGCCTGCGGgtactcatca ... tatggtgcagACATACATGGACTCAGAGATTCGAGCGATTATGGCGCAGTACATGCCTTTG
EST: TCTCTATTCTTGCCCTGGGCAGCTACGTTGTCTACAAATACCGCCTGCGG ACATACATGGACTCAGAGATTCGAGCGATTATGGCGCAGTACATGCCTTTGEST: gi|37828786|gb|BJ586798.1|BJ586798
genomic: TCTCTATTCTTGCCCTGGGCAGCTACGTTGTCTACAAATACCGCCTGCGGgtactcatca ... tatggtgcagACATACATGGACTCAGAGATTCGAGCGATTATGGCGCAGTACATGCCTTTG
EST: TATTCTTGCCCTGGGCAGCTACGTTGTCTACAAATACCGCCTGCGG ACATACATGGACTCAGAGATTCGAGCGATTATGGCGCAGTACATGCCTTTGEST: gi|37848184|gb|BJ606192.1|BJ606192
genomic: TATTCTTGCCCTGGGCAGCTACGTTGTCTACAAATACCGCCTGCGGgtactcatca ... tatggtgcagACATACATGGACTCAGAGATTCGAGCGATTATGGCGCAGTACATGCCTTTG
EST: TCTCTATTCTTGCCCTGGGCAGCTACGTTGTCTACAAATACCGCCTGCGG ACATACATGGACTCAGAGATTCGAGCGATTATGGCGCAGTACATGCCTTTGEST: gi|37847726|gb|BJ605734.1|BJ605734
genomic: TCTCTATTCTTGCCCTGGGCAGCTACGTTGTCTACAAATACCGCCTGCGGgtactcatca ... tatggtgcagACATACATGGACTCAGAGATTCGAGCGATTATGGCGCAGTACATGCCTTTG
EST: TCTCTATTCTTGCCCTGGGCAGCTACGTTGTCTACAAATACCGCCTGCGG ACATACATGGACTCAGAGATTCGAGCGATTATGGCGCAGTACATGCCTTTGEST: gi|37853262|gb|BJ611270.1|BJ611270
genomic: TCTCTATTCTTGCCCTGGGCAGCTACGTTGTCTACAAATACCGCCTGCGGgtactcatca ... tatggtgcagACATACATGGACTCAGAGATTCGAGCGATTATGGCGCAGTACATGCCTTTG
EST: TCTCTATTCTTGCCCTGGGCAGCTACGTTGTCTACAAATACCGCCTGCGG ACATACATGGACTCAGAGATTCGAGCGATTATGGCGCAGTACATGCCTTTGEST: gi|67727112|gb|BJ977371.1|BJ977371
genomic: TCTCTATTCTTGCCCTGGGCAGCTACGTTGTCTACAAATACCGCCTGCGGgtactcatca ... tatggtgcagACATACATGGACTCAGAGATTCGAGCGATTATGGCGCAGTACATGCCTTTG
EST: TCTCTATTCTTGCCCTGGGCAGCTACGTTGTCTACAAATACCGCCTGCGG ACATACATGGACTCAGAGATTCGAGCGATTATGGCGCAGTACATGCCTTTGEST: gi|162155791|gb|FC331820.1|FC331820
genomic: TCTCTATTCTTGCCCTGGGCAGCTACGTTGTCTACAAATACCGCCTGCGGgtactcatca ... tatggtgcagACATACATGGACTCAGAGATTCGAGCGATTATGGCGCAGTACATGCCTTTG
EST: TCTTTATTCTTGCCCTGGGCAGTTACGTTGTCTACAAATACCGCCTGGGG ACATACATGGATTCAGAGATTCGAGCGATTATGGCGCAGTACATGCCTTTG
genomic: TCTCTATTCTTGCCCTGGGCAGCTACGTTGTCTACAAATACCGCCTGCGGgtactcatca ... tatggtgcagACATACATGGACTCAGAGATTCGAGCGATTATGGCGCAGTACATGCCTTTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGCGCAATCCAAGCTGGGCTTGACAGTTTCACTCATCGTCTTGGCCGGTCTCTCTATTCTTGCCCTGGGCAGCTACGTTGTCTACAAATACCGCCTGCGGgtactcatcacaccttctcgtttgataggtcttacatggccaagtttatcattcatattttgtgagtttatatgttgtgagtattttcagtgaatcgtgagcatggatgctatggtgcag
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