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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAGTATGAAGGTTATACAGATGATCCTACTGTTGCAAAGAGTTCCAATACTCCTACTTTTGCATCTCTTGCTCTTCGTATCAACAACGAACGCTGGGATGgtatgcatgatttggcaaatcagcgactatcttgtagctcttcatttttcgttctgtgaaatttcatctgaggtagcattcatcgaattgaattctccttcacgttgttttgacgtgaggttttttctggttgttgtag

Basic information

species Physcomitrella patens
transcript PP1S73_244V6.1
intron # 9
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100389659|gb|BY952465.1|BY952465
EST:     TCCTACTTTTGCATCTCTTGCTCTTCGTATCAACAACGAACGCTGGGATG                         GCGTACCTTTCATCGTGAAAGCTGGGAAGGCGTTGGATGCTAAGAAAGTCG
genomic: TCCTACTTTTGCATCTCTTGCTCTTCGTATCAACAACGAACGCTGGGATGgtatgcatga ... gttgttgtagGCGTACCTTTCATCGTGAAAGCTGGGAAGGCGTTGGATGCTAAAAAAGTCG
EST: gi|100389158|gb|BY952362.1|BY952362
EST:     TCCTACTTTTGCATCTCTTGCTCTTCGTATCAACAACGAACGCTGGGATG                         GCGTACCTTTCATCGTGAAAGCTGGGAAAGCGTTGGATGCTAAGAAAGTCG
genomic: TCCTACTTTTGCATCTCTTGCTCTTCGTATCAACAACGAACGCTGGGATGgtatgcatga ... gttgttgtagGCGTACCTTTCATCGTGAAAGCTGGGAAGGCGTTGGATGCTAAAAAAGTCG
EST: gi|208380876|gb|DC923358.1|DC923358
EST:     TCCTACTTTTGCATCTCTTGCTCTTCGTATCAACAACGAACGCTGGGATG                         GCGTACCTTTCATCGTGAAAGCTGGGAAGGCGTTGGATGCTAAAAAAGTCG
genomic: TCCTACTTTTGCATCTCTTGCTCTTCGTATCAACAACGAACGCTGGGATGgtatgcatga ... gttgttgtagGCGTACCTTTCATCGTGAAAGCTGGGAAGGCGTTGGATGCTAAAAAAGTCG
EST: gi|208398370|gb|DC912327.1|DC912327
EST:     TCCTACTTTTGCATCTCTTGCTCTTCGTATCACCAACGAACGCTGGGATG                         GCGTACCTTTCATCGTGAAAGCTGGGAAGGCGTTGGATGCTAAAAA-GTCN
genomic: TCCTACTTTTGCATCTCTTGCTCTTCGTATCAACAACGAACGCTGGGATGgtatgcatga ... gttgttgtagGCGTACCTTTCATCGTGAAAGCTGGGAAGGCGTTGGATGCTAAAAAAGTCG