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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACGCTGCATTCATTCTTATGCAGTTCATACAGATTCTGTCTGGGCTCTTGCAAGCACGCCTTCCTTCAGTCACGTGTATAGTGGCGGTCGTGACTTTTCTgtacgttcctacaaaggcctcctttagtatttcgcagatttcagtgctttcaaattgcgatcattacttttttagcatcaccaccttacaaatgcccatg...

Basic information

species Physcomitrella patens
transcript PP1S69_10V6.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S69_10V6.1 (Physcomitrella patens), 5'ss of exon 9
lower sequence: LOC_Os12g06810.2 (Oryza sativa), 5'ss of exon 9
ACGCTGCATTCATTCTTATGCAGTTCATACAGATTCTGTCTGGGCTCTTGCAAGCACGCCTTCCTTCAGTCACGTGTATAGTGGCGGTCGTGACTTTTCTgtacgttcctacaaaggcctcctttagtatttcgcagatttcagtgctttcaaattgcgatcattact--tttttagcatcaccaccttacaaatgcccatg
 || || |||||||||||||| || ||||| ||||| |||||||| ||||||||||| ||||| || ||||| || |||||||| ||  | ||    || ||  ||     |||        |  | | || |  | ||| |     ||   ||||  || | || ||  ||| | | ||  |                   
GCGATGTATTCATTCTTATGCTGTGCATACTGATTCAGTCTGGGCGCTTGCAAGCACTCCTTCGTTTAGTCATGTTTATAGTGGTGGAAGAGATCAGTCGgtgagt-----caag-----tttcaaatgttgcata-attgcttcttttctgaattctgaaccttcctgttttcttggatggcag-----------------

upper sequence: PP1S69_10V6.1 (Physcomitrella patens), 5'ss of exon 9
lower sequence: GRMZM2G167999_T02 (Zea mays), 5'ss of exon 9
ACGCTGCATTCATTCTTATGCAGTTCATACAGATTCTGTCTGGGCTCTTGCAAGCACGCCTTCCTTCAGTCACGTGTATAGTGGCGGTCGTGACTTTTCTgtacgttcctacaaaggcctcctttagtatttcgcagatttcagtgctttcaaattgcgatcattacttttttagcatcaccaccttacaaatgcccatg
 || ||  ||||||||||||| || ||||| |||||||| ||||| ||||||||||| ||| | ||  |||| || || ||||| ||  | ||    |||||  |||       |      |||  |||| |    || |  |||   |  |  | |   |  | |  ||||  | ||  ||    | | |         
GCGTTGTGTTCATTCTTATGCTGTGCATACTGATTCTGTTTGGGCACTTGCAAGCACTCCTGCATTTGGTCATGTCTACAGTGGTGGAAGAGATCAATCTgtgagtt-------aaattatcttgtgtatattattgaat--agtcactgtacttcgtcgttttgaacttttatgtattccctgtgttccag--------

upper sequence: PP1S69_10V6.1 (Physcomitrella patens), 5'ss of exon 9
lower sequence: GLYMA10G30050.1 (Glycine max), 5'ss of exon 8
ACGCTGCATTCATTCTTATGCAGTTCATACAGATTCTGTCTGGGCTCTTGCAAGCACGCCTTCCTTCAGTCACGTGTATAGTGGCGGTCGTGACTTTTCTgtacgt----tcctacaaaggcctcct--ttagtatttcgcagatttca-gtgctttcaaattgcgatcattacttttt-----tagcatcaccaccttacaaatgccc-atg-------
||||||  | ||||||||||||||||||||||||||| | |||||||||||||||||  |  | || ||||| || |||||||| ||| | |||| ||||||  ||    |  | | |     |  |  |||  ||  |   || || |  || | ||   |||   |  ||| ||  |     | |  | ||    |   || |     ||        
ACGCTGTGTGCATTCTTATGCAGTTCATACAGATTCTATTTGGGCTCTTGCAAGCACTTCAACATTTAGTCATGTTTATAGTGGTGGTAGAGACTCTTCTgtgagtgcagtttttcgataaatttttaattatcatgactttgaatttatatgatgtctccttgttttgcttaattagtgaagcttgtgttactgattcgtaattcttttatttttgtag

upper sequence: PP1S69_10V6.1 (Physcomitrella patens), 5'ss of exon 9
lower sequence: GLYMA19G42990.1 (Glycine max), 5'ss of exon 9
ACGCTGCATTCATTCTTATGCAGTTCATACAGATTCTGTCTGGGCTCTTGCAAGCACGCCTTCCTTCAGTCACGTGTATAGTGGCGGTCGTGACTTTTCTgtacgttcctacaaaggcctcctttagtatttcgcagatttcagtgctt-tcaaattgcga--tcattacttt---tttagcatcaccaccttacaaatgcccatg---------------------------------
| | ||  | ||||||||||||||||||||||||||||| ||||| ||||| ||||| ||  | || ||||| || |||||||| ||  | |||||||| ||  || |   |          ||||  ||    |  ||||   |  |  ||| ||   ||  |  | || ||   | |    |       | || | ||  | |                                  
AAGATGTGTGCATTCTTATGCAGTTCATACAGATTCTGTTTGGGCACTTGCCAGCACCCCAACATTTAGTCATGTTTATAGTGGAGGGAGAGACTTTTCAgtgagtgcaaccttctattaaatttaacatcaaactaattttttttatcatcacatcttgaatttgtcacattacatctccttttcttgtttaactagtgaacctcgtattctaatgttgtattcttttataccctaag

upper sequence: PP1S69_10V6.1 (Physcomitrella patens), 5'ss of exon 9
lower sequence: GLYMA19G43070.1 (Glycine max), 5'ss of exon 9
ACGCTGCATTCATTCTTATGCAGTTCATACAGATTCTGTCTGGGCTCTTGCAAGCACGCCTTCCTTCAGTCACGTGTATAGTGGCGGTCGTGACTTTTCTgtacgt------tcctacaaaggcctcctttagtatttcgcagatttcagtgctttcaaattgcgatcat---------tacttttttagcatcaccaccttacaaatgcccatg------------------------------
  | ||  | ||||||||||||||||||||||||||||| ||||| ||||| ||||| ||  | || ||||| || |||||||| ||  | |||||||| ||  ||      | ||||  |      | | |   | |     |||    |  || ||  ||| | | ||          |  |  ||  | |    | |||   ||  | | |                               
GAGATGTGTGCATTCTTATGCAGTTCATACAGATTCTGTTTGGGCACTTGCCAGCACCCCAACATTTAGTCATGTTTATAGTGGAGGGAGAGACTTTTCAgtgagtgaaaccttctactgaaattaacatcaaactattttttattattattattacatcttgagtttatgtgaaatcacatctccttttcctgtttaacttgtgaac-ctcgtcttctaatgtcatattcttttatgccttaag

upper sequence: PP1S69_10V6.1 (Physcomitrella patens), 5'ss of exon 9
lower sequence: GLYMA03G40360.1 (Glycine max), 5'ss of exon 9
ACGCTGCATTCATTCTTATGCAGTTCATACAGATTCTGTCTGGGCTCTTGCAAGCACGCCTTCCTTCAGTCACGTGTATAGTGGCGGTCGTGACTTTTCTgtacgttcctacaaaggcctcctttagtatttcgcagatttcagtgctttcaaattgcgatcattacttttttagcatcaccaccttacaaatg-cccatg---------------------------------------
  | ||  | ||||||||||||||||||||||||||||| ||||| ||||| ||||| ||  | || ||||| || |||||||| ||  | |||||||| ||  || |   |          ||||  ||    |  ||||   || | | | ||   ||   |   |    || |||| ||   |      |  |   ||                                       
GAGATGTGTGCATTCTTATGCAGTTCATACAGATTCTGTTTGGGCACTTGCCAGCACCCCAACATTTAGTCATGTTTATAGTGGAGGGAGAGACTTTTCAgtgagtgcgaccttctattaaatttaacatcaaact-atttttttgttattacatcttgaatttatgtcacataacatctccttttcttgtttaacttgtgaacctcatcttctaatgttgtattcttttataccctaag

upper sequence: PP1S69_10V6.1 (Physcomitrella patens), 5'ss of exon 9
lower sequence: GLYMA03G40440.4 (Glycine max), 5'ss of exon 9
ACGCTGCATTCATTCTTATGCAGTTCATACAGATTCTGTCTGGGCTCTTGCAAGCACGCCTTCCTTCAGTCACGTGTATAGTGGCGGTCGTGACTTTTCTgtacgt------tcctacaaaggcctcctttag----tatttcgcag--atttcagtgctttcaaattgcg-atcat--tacttttttagcatcaccaccttacaaatgcccatg------------------------------
  | ||  | ||||||||||||||||||||||||||||| ||||| || || ||||| ||  | || ||||| || |||||||||||  | |||||||| ||  ||      | |||  ||      | | |     |||||       ||| |      || || ||  |   |||  ||  |  ||  | |    | |||   ||  | |||                               
GAGATGTGTGCATTCTTATGCAGTTCATACAGATTCTGTTTGGGCACTCGCCAGCACCCCAGCATTTAGTCATGTTTATAGTGGCGGGAGAGACTTTTCAgtgagtgaaaccttctattaaaattaacatcaaactatatttttttattattactacatcttgaacttatgtgacatcatatctccttttcctgtttaacttgtgaac-ctcatcttctaatgccgtattcttttataccttaag

upper sequence: PP1S69_10V6.1 (Physcomitrella patens), 5'ss of exon 9
lower sequence: Vv14s0030g01350.t01 (Vitis vinifera), 5'ss of exon 9
ACGCTGCATTCATTCTTATGCAGTTCATACAGATTCTGTCTGGGCTCTTGCAAGCACGCCTTCCTTCAGTCACGTGTATAGTGGCGGTCGTGACTTTTCTgtacgttcctacaaaggcctcctttagtatttcgcagatttcagtgctttcaaattgcgatcattacttttttagcatcaccaccttacaaatgcccatg-------------------------------------------------------------------------------------------------------
  | ||| | ||||| ||||| || |||||||||||||||||||| ||||||||||| ||  | || || || || |||||||| ||  | ||| |||| ||  || |      ||   ||    || | |   |  ||   | |  |  |      |  || ||| | ||||  ||| |     || |    ||  |||                                                                                                       
GAGATGCGTGCATTCCTATGCCGTGCATACAGATTCTGTCTGGGCACTTGCAAGCACCCCAACATTTAGCCATGTTTATAGTGGTGGGAGGGACCTTTCCgtgagtac------agttttctcccagaactcaaccaatgcaaatattcccctgcctctttc-tta-tgttttgccattatttttttcctttagcatatgatgttttctcccttttttctttctctatctctctctctctctcttttctgatctttttctgcaatactcatcctttgatgcccaattctgtttatactctcag