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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCCAACGTGGTGGACACAGAGTGTTAAGAAGGTTGTTCCAGGTCTGAGTATGATTTCGTTCATTCCAGgtaagatttaaggatcgtcatgagatgacgttatgatgttggagcttaatttctattgttgcaagtgattttggtattttgcgatttacatctaactagtttctcgtttgtgtaaaatatgtag

Basic information

species Physcomitrella patens
transcript PP1S68_234V6.1
intron # 9
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208395924|gb|DC920346.1|DC920346
EST:     TTCGTTCATTCCAG                         ACGTATCTGTAACTGTG-TNGTCATC-TTTTAATGATGGCNGTGGCTGTTA
genomic: TTCGTTCATTCCAGgtaagattta ... aaatatgtagACGTATCTGTAACTGTGTTGGTCATCTTTTTAATGATGGCGGTGGCTGTTA
EST: gi|208389101|gb|DC945677.1|DC945677
EST:     TGAGTATGATTTCGTTCANTCCAG                         ACGTATCTGTAACTGTGTTGGTCATCTTTTTAATGATGGCGGTGGCTGTTA
genomic: TGAGTATGATTTCGTTCATTCCAGgtaagattta ... aaatatgtagACGTATCTGTAACTGTGTTGGTCATCTTTTTAATGATGGCGGTGGCTGTTA
EST: gi|208400731|gb|DC904909.1|DC904909
EST:     GANTGTTAAGAAGGTTGTTCCAGGTCTGANTATGATTTCGTTCATTCNAA                         ACGTATCTGTAACTGTGT-GGNCATCTTTT
genomic: GAGTGTTAAGAAGGTTGTTCCAGGTCTGAGTATGATTTCGTTCATTCCAGgtaagattta ... aaatatgtagACGTATCTGTAACTGTGTTGGTCATCTTTT
EST: gi|208378180|gb|DC918801.1|DC918801
EST:     GTCTGAGTATGA-TTCGNTCATTCCAG                         ACGTATCTGTAACTGTG-TGGTCATC-TTTTAATGATGGCGGTGGCTGTTA
genomic: GTCTGAGTATGATTTCGTTCATTCCAGgtaagattta ... aaatatgtagACGTATCTGTAACTGTGTTGGTCATCTTTTTAATGATGGCGGTGGCTGTTA
EST: gi|208365198|gb|DC931164.1|DC931164
EST:     GAGTGTTAANAANGTNGTTCCAGGTCTGAATATGANTTCGTTCATNCCAA                         ACGTATCTGTAACTGNGTTGGTCATCTTTT-AATGA
genomic: GAGTGTTAAGAAGGTTGTTCCAGGTCTGAGTATGATTTCGTTCATTCCAGgtaagattta ... aaatatgtagACGTATCTGTAACTGTGTTGGTCATCTTTTTAATGA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTCCAACGTGGTGGACACAGAGTGTTAAGAAGGTTGTTCCAGGTCTGAGTATGATTTCGTTCATTCCAGgtaagatttaaggatcgtcatgagatgacgttatgatgttggagcttaatttctattgttgcaagtgattttggtattttgcgatttacatctaactagtttctcgtttgtgtaaaatatgtag

- - - - - - - - - - - - - AAGAAG