1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
TACACTCGGATTACTGAAAAAAAACTGCGATGCCGTTATTCCTGTTGACTCGAGCTCCATTTCAGAGGAAAATCCTATACGAATCCTCGCAGCTGAATCTgtaagaatcgttaaatcatgcacaaaatagtttgattatgcaagttctccttgttacatgacgcaacatttgtccgtgttgttgcaaatacgtttgcacg...
species | Physcomitrella patens |
transcript | PP1S66_139V6.1 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: CGAGCTCCATTTCAGAGGAAAATCCTATACGAATCCTCGCAGCTGAATCT GTTAGTAAAGCAAAGCTTCACTATTCAGAATTGGACTACTCGTCAGCATGTEST: gi|162184035|gb|FC359405.1|FC359405
genomic: CGAGCTCCATTTCAGAGGAAAATCCTATACGAATCCTCGCAGCTGAATCTgtaagaatcg ... ttgtgatcagGTTAGTAAAGCAAAGCTTCACTATTCAGAATTGGACTACTCGTCAGCATGT
EST: CGAGCTCCATTTCAGAGGAAAATCCTATACGAATCCTCGCAGCTGAATCT GTTAGTAAAGCAAAGCTTCACTATTCAGAATTGGACTACTCGTCAGCATGTEST: gi|67725192|gb|BJ975451.1|BJ975451
genomic: CGAGCTCCATTTCAGAGGAAAATCCTATACGAATCCTCGCAGCTGAATCTgtaagaatcg ... ttgtgatcagGTTAGTAAAGCAAAGCTTCACTATTCAGAATTGGACTACTCGTCAGCATGT
EST: CGAGCTCCATTTCAGAGGAAAATCCTATACGAATCCTCGCAGCTGAATCT GTTAGTAAAGCAAAGCTTCACTATTCAGAATTGGACTACTCGTCAGCATGT
genomic: CGAGCTCCATTTCAGAGGAAAATCCTATACGAATCCTCGCAGCTGAATCTgtaagaatcg ... ttgtgatcagGTTAGTAAAGCAAAGCTTCACTATTCAGAATTGGACTACTCGTCAGCATGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TACACTCGGATTACTGAAAAAAAACTGCGATGCCGTTATTCCTGTTGACTCGAGCTCCATTTCAGAGGAAAATCCTATACGAATCCTCGCAGCTGAATCTgtaagaatcgttaaatcatgcacaaaatagtttgattatgcaagttctccttgttacatgacgcaacatttgtccgtgttgttgcaaatacgtttgcacg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA