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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGGGAATCTTCAACAATCAATGAATACAGTCGACAATCACgtgagtatatcaaacactgggcccctatgacattaagtttgccaagatgtcttcgaagttggatttcttctgtgttctgtgttatgtgttagtttgccta...

Basic information

species Physcomitrella patens
transcript PP1S62_89V6.3
intron # 9
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18338070|gb|BJ170094.1|BJ170094
EST:     GGGGAATCTTCAACAATCAATGAATACAGTCGACAATCAC                         GAATCTAAGGTGGATGACAATGCGGTAGCGAGCCTTGTGGCCATGGGGTTT
genomic: GGGGAATCTTCAACAATCAATGAATACAGTCGACAATCACgtgagtatat ... attgacgcagGAATCTAAGGTGGATGACAATGCGGTAGCGAGCCTTGTGGCCATGGGGTTT
EST: gi|162240279|gb|FC414324.1|FC414324
EST:     GGGGAATCTTCAACAATCAATGAATACAGTCGACAATCAC                         GAATTTAAGGTGGATGACAATGCGGTAGCGAGCCTTGTGGCCATGGGGTTT
genomic: GGGGAATCTTCAACAATCAATGAATACAGTCGACAATCACgtgagtatat ... attgacgcagGAATCTAAGGTGGATGACAATGCGGTAGCGAGCCTTGTGGCCATGGGGTTT
EST: gi|208393768|gb|DC928660.1|DC928660
EST:     GGGGAATCTTCAACAATCAATGAATACAGTCGACAATCAC                         GAATCTAAGGTGGATGACAATGCGGTAGCGAGCCTTGTGGCCATGGGGTTT
genomic: GGGGAATCTTCAACAATCAATGAATACAGTCGACAATCACgtgagtatat ... attgacgcagGAATCTAAGGTGGATGACAATGCGGTAGCGAGCCTTGTGGCCATGGGGTTT
EST: gi|162253104|gb|FC428936.1|FC428936
EST:     GGGGAATCTTCAACAATCAATGAATACAGTCGACAATCAC                         GAATCTAAGGTGGATGACAATGCGGTAGCGAGCCTTGTGGCCATGGGGTTT
genomic: GGGGAATCTTCAACAATCAATGAATACAGTCGACAATCACgtgagtatat ... attgacgcagGAATCTAAGGTGGATGACAATGCGGTAGCGAGCCTTGTGGCCATGGGGTTT
EST: gi|162240280|gb|FC414325.1|FC414325
EST:     GGGGAATCTTCAACAATCAATGAATACAGTCGACAATCAC                         GAATCTAAGGTGGATGACAATGCGGTAGCGAGCCTTGTGGCCATGGGGTTT
genomic: GGGGAATCTTCAACAATCAATGAATACAGTCGACAATCACgtgagtatat ... attgacgcagGAATCTAAGGTGGATGACAATGCGGTAGCGAGCCTTGTGGCCATGGGGTTT
EST: gi|162183078|gb|FC360644.1|FC360644
EST:     GGGGAATCTTCAACAATCAATGAATACAGTCGACAATCAC                         GAATCTAAGGTGGATGACAATGCGGTAGCGAGCCTTGTGGCCATGGGGTTT
genomic: GGGGAATCTTCAACAATCAATGAATACAGTCGACAATCACgtgagtatat ... attgacgcagGAATCTAAGGTGGATGACAATGCGGTAGCGAGCCTTGTGGCCATGGGGTTT
EST: gi|208367645|gb|DC955004.1|DC955004
EST:     GGGGAATCTTCAACAATCAATGAATACAGTCGACAATCAC                         GAATCTAAGGTGGATGACAATGCGGTAGCGAGCCTTGTGGCCATGGGGTTT
genomic: GGGGAATCTTCAACAATCAATGAATACAGTCGACAATCACgtgagtatat ... attgacgcagGAATCTAAGGTGGATGACAATGCGGTAGCGAGCCTTGTGGCCATGGGGTTT
EST: gi|208393509|gb|DC949671.1|DC949671
EST:     GGGGAATCTTCAACAATCAATGAATACAGTCGACAATCAC                         GAATCTAAGGTGGATGACAATGCGGTAGCGAGCCTTGTGGCCATGGAGTTT
genomic: GGGGAATCTTCAACAATCAATGAATACAGTCGACAATCACgtgagtatat ... attgacgcagGAATCTAAGGTGGATGACAATGCGGTAGCGAGCCTTGTGGCCATGGGGTTT
EST: gi|162183077|gb|FC360643.1|FC360643
EST:     GGGGAATCTTCAACAATCAATGAATACAGTCGACAATCAC                         GAATCTAAGGTGGATGACAATGCGGTAGCGAGCCTTGTGGCCATGGGGTTT
genomic: GGGGAATCTTCAACAATCAATGAATACAGTCGACAATCACgtgagtatat ... attgacgcagGAATCTAAGGTGGATGACAATGCGGTAGCGAGCCTTGTGGCCATGGGGTTT
EST: gi|208392795|gb|DC953692.1|DC953692
EST:     GGGGAATCTTCAACAATCAATGAATACAGTCGACAATCAC                         GAATCTAAGGTGGATGACAATGCGGTAGCGAGCCTTGTGGCCATGGGGTTT
genomic: GGGGAATCTTCAACAATCAATGAATACAGTCGACAATCACgtgagtatat ... attgacgcagGAATCTAAGGTGGATGACAATGCGGTAGCGAGCCTTGTGGCCATGGGGTTT