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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGAAACCTCCTGCGCTTGCGAGGATTTTGCATGACTCCCTCTGAACGGCTGCTTGTTTATCCTTACATGCCCAATGGCAGTGTAGCATCTCGTCTTCGAGgtaggttaatttcttattttgtctaacgaattctttagaagctactcactattaatttccctcacatgtgaataccaggttgcccaagaacgatcatgtt...

Basic information

species Physcomitrella patens
transcript PP1S60_60V6.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S60_60V6.1 (Physcomitrella patens), 5'ss of exon 9
lower sequence: GLYMA15G09100.1 (Glycine max), 5'ss of exon 10
AGAAACCTCCTGCGCTTGCGAGGATTTTGCATGACTCCCTCTGAACGGCTGCTTGTTTATCCTTACATGCCCAATGGCAGTGTAGCATCTCGTCTTCGAGgtaggtta---atttcttatttt-gtctaacgaattctttagaagctactcactattaatttccctcacatgtgaataccaggttgcccaagaacgatcatgtt---
 | |||||| ||||  |    |||||||||||||| ||   |||| || |||||||||||||||||||||||||||||||||| ||   ||   |  |||||  |||    |||  | ||||| || |       | | || ||  |  | |||    |  | | |   |  || | |  || |  |   | | | || |  |    
CGGAACCTCTTGCGTCTTTATGGATTTTGCATGACACCAGATGAAAGGTTGCTTGTTTATCCTTACATGCCCAATGGCAGTGTTGCTGATCACTTGAGAGgtttgtttcatattattcatttttgtatttgaggctgtgtaaaatattgtaactgagtagatacatggaaattggaaaaaagctgtcttcaaatcaatgacatgtag

upper sequence: PP1S60_60V6.1 (Physcomitrella patens), 5'ss of exon 9
lower sequence: GLYMA13G30050.1 (Glycine max), 5'ss of exon 9
AGAAACCTCCTGCGCTTGCGAGGATTTTGCATGACTCCCTCTGAACGGCTGCTTGTTTATCCTTACATGCCCAATGGCAGTGTAGCATCTCGTCTTCGAGgtaggtt--aatttcttattttgtctaacgaattctttagaagctactcactattaatttccctcacatgtgaataccaggttgcccaagaacgatcatgtt
 | |||||| ||||  |    ||||| || ||||| ||   |||| || | ||||||||||||||||||||||| |||||||| ||   |||  |  |||||  |||  |  || ||  ||| |  |    |  || |  ||  || |    | |||        |||||    |  |||        ||||  |  |    
CGGAACCTCTTGCGTCTTTATGGATTCTGTATGACACCAGATGAAAGGTTACTTGTTTATCCTTACATGCCCAACGGCAGTGTTGCTGATCGCTTGAGAGgtttgtttcatatttttcatttcttcatttgaggctgtgtaaaatatt-gtaactaagagtagatacatgcctcttacagtggaaattagaaaaaaaaaaa-

upper sequence: PP1S60_60V6.1 (Physcomitrella patens), 5'ss of exon 9
lower sequence: GLYMA13G07060.2 (Glycine max), 5'ss of exon 9
AGAAACCTCCTGCGCTTGCGAGGATTTTGCATGACTCCCTCTGAACGGCTGCTTGTTTATCCTTACATGCCCAATGGCAGTGTAGCATCTCGTCTTCGAGgtaggttaatttct---------tattttgtctaacgaattctttagaagctactcactattaatttccctcacatgtgaataccaggttgcccaagaacgatcatgtt
|||||||||||     ||   |||||||||||||| ||  | ||| ||||  | ||||||||||||||| ||||||||||||| || ||| | ||    |||| | | |    |          |  || ||||  |       ||||   |       | ||||     |   ||  || |   | |        | |  |       
AGAAACCTCCTCAAACTGTATGGATTTTGCATGACACCAACAGAAAGGCTTTTGGTTTATCCTTACATGTCCAATGGCAGTGTTGCTTCTAGGCTCAAGGgtaagctcaacggtagaaagagacaccttttctacagtccctgatagagcttttgagtaaataatggttattgtatcagact--taagccctgtttggataa-------

upper sequence: PP1S60_60V6.1 (Physcomitrella patens), 5'ss of exon 9
lower sequence: GLYMA19G05200.1 (Glycine max), 5'ss of exon 9
AGAAACCTCCTGCGCTTGCGAGGATTTTGCATGACTCCCTCTGAACGGCTGCTTGTTTATCCTTACATGCCCAATGGCAGTGTAGCATCTCGTCTTCGAGgtagg-ttaatttcttattttgtctaacgaattctttagaagctactcactattaatttccctcacat-gtgaataccaggttgcccaagaacgatcatgtt---
|||||||||||     ||   |||||||||||||| ||  | ||| ||||  | ||||||||||||||| ||||||||||||| || ||| | ||    |||| | | |||     |  | ||||      || |||   ||   || | ||   ||||    || || |||| ||    ||  |  | |     |   | |   
AGAAACCTCCTCAAACTGTATGGATTTTGCATGACACCAACCGAAAGGCTTTTGGTTTATCCTTACATGTCCAATGGCAGTGTTGCTTCTAGGCTCAAGGgtaagctcaatggtagaaatagtctct----ttattttacagtccctga-tagagattttgaacaaatagtgattattgtgtcccttaggccttctttggattaa

upper sequence: PP1S60_60V6.1 (Physcomitrella patens), 5'ss of exon 9
lower sequence: GLYMA08G28380.1 (Glycine max), 5'ss of exon 10
AGAAACCTCCTGCGCTTGCGAGGATTTTGCATGACTCCCTCTGAACGGCTGCTTGTTTATCCTTACATGCCCAATGGCAGTGTAGCATCTCGTCTTCGAGgtaggttaatttcttattttgtctaacgaattctttagaagct-actcactattaatttccctcacatgtgaataccaggttgcccaagaacgatcatgtt-
 ||||||||||  |  ||   |||||||||||||| || || ||| ||||  | |||||||| |||||| ||||||||||||| || || |||||    |||| | | | || | |  ||    |   || | |  |  | || | | | | ||| |||     |||| |           |   ||      ||| |  | 
CGAAACCTCCTCAGACTGTATGGATTTTGCATGACACCATCGGAAAGGCTTTTGGTTTATCCATACATGTCCAATGGCAGTGTCGCTTCCCGTCTCAAGGgtaagatcagttttaaagtttcaaactcaaatttagactacctgatttagtgttattttggaaaacatattctgtttttacttttcatt--ttatcttacta

upper sequence: PP1S60_60V6.1 (Physcomitrella patens), 5'ss of exon 9
lower sequence: GLYMA02G04150.2 (Glycine max), 5'ss of exon 9
AGAAACCTCCTGCGCTTGCGAGGATTTTGCATGACTCCCTCTGAACGGCTGCTTGTTTATCCTTACATGCCCAATGGCAGTGTAGCATCTCGTCTTCGAGgtaggttaatttcttattttgtctaacgaattctt-tagaagctact-----cactattaatttccctcaca--tgtgaataccaggttgcccaagaacgatcatgtt------------
 | || || |||||  |    || |||||||  ||||    |||| |||| ||||||||||| |||||| | |||||||||||||| ||| |  |   ||||  | | |||   | |||  |  | |   |  |  | || | |  |      ||| | |||   |  ||    | ||||  | |  ||          | |  ||              
CGGAATCTTCTGCGGCTTTCGGGGTTTTGCAGTACTCAGCATGAAAGGCTCCTTGTTTATCCCTACATGTCTAATGGCAGTGTAGCCTCTAGATTAAAAGgttagctcattgaatttttcattaagctgctcatggttgaggttgatatttatactctaaatcctcaacatcattttgaactctaccttatttgtctttggttttggatttatgtaccag

upper sequence: PP1S60_60V6.1 (Physcomitrella patens), 5'ss of exon 9
lower sequence: AT3G25560.3 (Arabidopsis thaliana), 5'ss of exon 9
AGAAACCTCCTGCGCTTGCGAGGATTTTGCATGACTCCCTCTGAACGGCTGCTTGTTTATCCTTACATGCCCAATGGCAGTGTAGCATCTCGTCTTCGAGgtaggttaatttcttattttgtctaacgaattctttagaagctactcactattaatttccctcacatgtgaataccaggttgcccaagaacgatcatgtt
 | || ||||| |||||    || || || |  ||| ||||||||||||| || ||||||||||||||| ||||||||||||| || ||||||||   |||||| ||||||    |  |||  |   || ||||||| | |  | | ||      ||| |    | |||||||     |  |                  
CGGAATCTCCTCCGCTTATACGGTTTCTGTACTACTTCCTCTGAACGGCTTCTCGTTTATCCTTACATGTCCAATGGCAGTGTCGCTTCTCGTCTCAAAGgtag-ttaattaaacaccttgattt-tgatttctttacatga-attgacc--cggtttacgattcgtgtgaatggtttgcag------------------

upper sequence: PP1S60_60V6.1 (Physcomitrella patens), 5'ss of exon 9
lower sequence: Vv14s0083g00620.t01 (Vitis vinifera), 5'ss of exon 9
AGAAACCTCCTGCGCTTGCGAGGATTTTGCATGACTCCCTCTGAACGGCTGCTTGTTTATCCTTACATGCCCAATGGCAGTGTAGCATCTCGTCTTCGAGgtaggttaatttcttattttgtctaacgaattctttagaagctactcactattaatttccctcacatgtgaataccaggttgcccaagaacgatcatgtt------
 | ||||||||  |  |    || ||||| || ||  |||||||| |||| || ||||| || |||||| ||||||||||||| || ||||||||   |||| |   |||     |     || || ||||       |||||| |  || | || | ||   |    | ||  | |  ||  || |  |   | || ||      
CGGAACCTCCTCAGGCTATATGGTTTTTGTATCACCACCTCTGAAAGGCTTCTGGTTTACCCCTACATGTCCAATGGCAGTGTTGCTTCTCGTCTCAAAGgt-gacgaat-----aaaagttcaaatgaatc-----aaagctatt-gctctcaaatgccg--attcttcaaagctaaattagcccatcat--ttatttttaacag