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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGTTAGGGACACCTACACGTGAGGAGATAAAGTGCATGAATCCGAACTACACGGAGTTCAAGTTTCCTCAAATTAAGGCTCACCCGTGGCACAAGgtatggtttgtatgtttgggttagctatttttagtggtctattatataatttgataggaattatccgtgtcctcgatattggtgattttgaatttggttggttggacgctgctactcgttgtgattgggagaatggagcgtgttgcattgaccttagcaacgtgcgaattgattggttctgtggtggcag

Basic information

species Physcomitrella patens
transcript PP1S52_55V6.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S52_55V6.1 (Physcomitrella patens), 5'ss of exon 9
lower sequence: LOC_Os03g62500.1 (Oryza sativa), 5'ss of exon 10
GTGTTAGGGACACCTACACGTGAGGAGATAAAGTGCATGAATCCGAACTACACGGAGTTCAAGTTTCCTCAAATTAAGGCTCACCCGTGGCACAAGgtatggtttgtatgtttgggttagctatttttagtggtctattatataatttgataggaattatccgtgtcctcgatattggtgattttgaatttggttggttggacgctgctactcgttgtgattgggagaatggagcgtgttgcattgaccttagcaacgtgcgaattgattggttctgtggtggcag
|| || || || || ||| | || ||||| |||||||||||||||||||||||||||||||| || ||||||||||||||||| || |||||||||||||  |    ||  |||    | ||| |   |    || ||  |   ||||| ||   | | |  |       || |  |     ||| ||      |   |  | ||||                                                                               
GTTTTGGGTACTCCAACAAGGGAAGAGATCAAGTGCATGAATCCGAACTACACGGAGTTCAAATTCCCTCAAATTAAGGCTCATCCATGGCACAAGgtattctgcccatccttgacaaaactaatgcaat--atcgat-gtccgatttggtacatacttttgg-------gacagggagatcttttaacgcaaattact--atgctgt------------------------------------------------------------------------------

upper sequence: PP1S52_55V6.1 (Physcomitrella patens), 5'ss of exon 9
lower sequence: LOC_Os05g04340.1 (Oryza sativa), 5'ss of exon 10
GTGTTAGGGACACCTACACGTGAGGAGATAAAGTGCATGAATCCGAACTACACGGAGTTCAAGTTTCCTCAAATTAAGGCTCACCCGTGGCACAAGgtatg-gtttgtatgtttgggttagctatttttagtggtctattatataatttgataggaattatccgtgtcctcgatattggtgattttgaatttggttggttggacgctgctactcgttgtgattgggagaatggagcgtgttgcattgaccttagcaacgtgcgaattgattggttctgtggtggcag
||  | || || |||||||| |||||||| ||||||||||| || || ||||| ||||| || ||||| ||||| || |||||||| ||||||||||||   |    ||   ||  ||| |  | | ||  |  | |||| ||   || || |   | | |   | ||||   | ||    |                                                                                                         
GTTCTGGGTACCCCTACACGAGAGGAGATTAAGTGCATGAACCCAAATTACACCGAGTTTAAATTTCCGCAAATCAAAGCTCACCCATGGCACAAGgtagaagaaaataatcttatgttgg--actgtttattttttattttagggtt-gaaacctaatgtagctttcctttttttttaccaccag-----------------------------------------------------------------------------------------------------

upper sequence: PP1S52_55V6.1 (Physcomitrella patens), 5'ss of exon 9
lower sequence: LOC_Os01g14860.3 (Oryza sativa), 5'ss of exon 9
GTGTTAGGGACACCTACACGTGAGGAGATAAAGTGCATGAATCCGAACTACACGGAGTTCAAGTTTCCTCAAATTAAGGCTCACCCGTGGCACAAGgtat--ggtttgtatgtttgggttagctatttttagtggtctattatataatttgataggaattatccgtgtcctcgatattggtgattttgaatttggttggttggacgctgctactcgttgtgattgggagaatggagcgtgttgcattgaccttagcaacgtgcgaattgattggttctgtggtggcag
||  | || ||||||||| | ||||| || || ||||||||||| ||||| || |||||||||||||| || ||||| || ||||| |||||||||||     || | | | |||  ||| | |||  ||  |   | ||  |  | | | |  |  |||| || | |     | ||   |                                                                                                           
GTCCTTGGAACACCTACAAGGGAGGAAATTAAATGCATGAATCCAAACTATACCGAGTTCAAGTTTCCACAGATTAAAGCACACCCATGGCACAAGgtgcaaagtctatctatttctgtt-gttatactt--tcagcaatcgtccagtatca-ggtgattaaccatatatgtaaaatatttag---------------------------------------------------------------------------------------------------------

upper sequence: PP1S52_55V6.1 (Physcomitrella patens), 5'ss of exon 9
lower sequence: LOC_Os01g19150.4 (Oryza sativa), 5'ss of exon 9
GTGTTAGGGACACCTACACGTGAGGAGATAAAGTGCATGAATCCGAACTACACGGAGTTCAAGTTTCCTCAAATTAAGGCTCACCCGTGGCACAAGgtatg-gtttgtatgtttgggttagctatttttagtggtctattatataatttgataggaattatccgtgtcctcgatattggtgattttgaatttggttggttggacgctgctactcgttgtgattgggagaatggagcgtgttgcattgaccttagcaacgtgcgaattgattggttctgtggtggcag
||  | || || || ||| | || || || ||    ||||||||||||||||| ||||| ||||| || ||||| || |||||||| |||||||||||| | |  |  |  |||   || | |  | ||| |     | |  ||  | |  |    | |||   |    |  ||| ||   ||| | | | ||  |  ||  ||        || |        |     || ||| ||| |                                             
GTACTGGGTACTCCAACAAGGGAAGAAATCAAACATATGAATCCGAACTACACTGAGTTTAAGTTCCCCCAAATCAAAGCTCACCCATGGCACAAGgtaggagccttcacatttatttt-gttcctcttattttcagagttaatg-tctcctgcttactatttataaatt--ataatgtgtattctaattatgcatactttcaccagatctttcataaaagaatgccatctgaagc-tgtag---------------------------------------------

upper sequence: PP1S52_55V6.1 (Physcomitrella patens), 5'ss of exon 9
lower sequence: LOC_Os02g14130.1 (Oryza sativa), 5'ss of exon 9
GTGTTAGGGACACCTACACGTGAGGAGATAAAGTGCATGAATCCGAACTACACGGAGTTCAAGTTTCCTCAAATTAAGGCTCACCCGTGGCACAAGgtatggtttgtatgtttgggttagctatttttagtggtctattatataatttgataggaattatccgtgtcctcgatattggtg-attttgaatttggttggttggacgctgctactcgttgtgattgggagaatggagcgtgttgcattgaccttagcaacgtgcgaattgattggttctgtggtggcag
||  | || || || ||||||||||| ||    ||||||||||| |||||||| || ||||  |||||||| ||||| |||||||| |||||||||||||      ||   |||  ||   || ||| ||   || ||| | | | |||||     ||||          |||| | ||| || ||  |    |    |   | |||||                                                                              
GTTCTTGGTACTCCAACACGTGAGGAAATCCGCTGCATGAATCCCAACTACACAGAATTCAGATTTCCTCAGATTAAAGCTCACCCATGGCACAAGgtat------tagaattgttttgtttacttt-agcattccatttttttaattgatg----ttat----------gatactagtgcatattacaacctgcaaatcctatgctgcag----------------------------------------------------------------------------

upper sequence: PP1S52_55V6.1 (Physcomitrella patens), 5'ss of exon 9
lower sequence: LOC_Os01g19150.5 (Oryza sativa), 5'ss of exon 10
GTGTTAGGGACACCTACACGTGAGGAGATAAAGTGCATGAATCCGAACTACACGGAGTTCAAGTTTCCTCAAATTAAGGCTCACCCGTGGCACAAGgtatg-gtttgtatgtttgggttagctatttttagtggtctattatataatttgataggaattatccgtgtcctcgatattggtgattttgaatttggttggttggacgctgctactcgttgtgattgggagaatggagcgtgttgcattgaccttagcaacgtgcgaattgattggttctgtggtggcag
||  | || || || ||| | || || || ||    ||||||||||||||||| ||||| ||||| || ||||| || |||||||| |||||||||||| | |  |  |  |||   || | |  | ||| |     | |  ||  | |  |    | |||   |    |  ||| ||   ||| | | | ||  |  ||  || | |                                                                               
GTACTGGGTACTCCAACAAGGGAAGAAATCAAACATATGAATCCGAACTACACTGAGTTTAAGTTCCCCCAAATCAAAGCTCACCCATGGCACAAGgtaggagccttcacatttatttt-gttcctcttattttcagagttaatg-tctcctgcttactatttataaatt--ataatgtgtattctaattatgcatactttcac-cag-------------------------------------------------------------------------------

upper sequence: PP1S52_55V6.1 (Physcomitrella patens), 5'ss of exon 9
lower sequence: LOC_Os01g10840.1 (Oryza sativa), 5'ss of exon 9
GTGTTAGGGACACCTACACGTGAGGAGATAAAGTGCATGAATCCGAACTACACGGAGTTCAAGTTTCCTCAAATTAAGGCTCACCCGTGGCACAAGgtatggtttgtatgtttgggttagctatttttagtggtctattatataatttgataggaattatccgtgtcctcgatattggtgattttgaatttggttggttggacgctgctactcgttgtgattgggagaatggagcgtgttgcattgaccttagcaacgtgcgaattgattggttctgtggtggcag
||  | || || || || |||||||| |||   |||||||| || ||||| || |||||||| |||||||| ||||||||||| || |||||||||||| |   ||| |  ||   || | |    ||  |  |  |  || | | |||   || ||| |  |   | || | |   ||  || || ||   |||   |               |||  ||    | |||| | |    ||||    | | |   |        ||| |   |    |     |||
GTTCTTGGTACTCCAACCCGTGAGGAAATACGATGCATGAACCCCAACTATACTGAGTTCAAATTTCCTCAGATTAAGGCTCATCCTTGGCACAAGgta-gccatgttttcttatattggatcaccttcctcat--accattttacttgcagggcattgtaggccacttcaaaaccagt--ttctgcatcatgtttaat---------------ttgaaataaaaaaaatgtatc----tgcagctgcttaactgatccatctgttgttctttcgcttaccaccag

upper sequence: PP1S52_55V6.1 (Physcomitrella patens), 5'ss of exon 9
lower sequence: LOC_Os05g11730.1 (Oryza sativa), 5'ss of exon 9
GTGTTAGGGACACCTACACGTGAGGAGATAAAGTGCATGAATCCGAACTACACGGAGTTCAAGTTTCCTCAAATTAAGGCTCACCCGTGGCACAAGgtatggtttgtat---gtttgggtt-agctatttttagtggtctattatataatttgatagg-aattatc----cgtgtcctcgat-attggtgattttgaatttggttggttggacgctgctact-cgttgtg-attgggagaatggagcgtgttg-cattgaccttagcaacgtgcgaattgattggttctgtggtggcag
||  | || ||||| || |||||||| |||   |||||||| |||||||| || ||||| | |||||| || || || |||||||| |||||||||||| |  |   ||    |    ||| ||  || | |   |   | || |||| |||  | |  || |||      ||  |   | | |||    ||  |  |||  |       ||      |||   |   || ||    |    || || |   |  | |||  ||   ||| |  |  | |                   
GTTCTTGGTACACCAACCCGTGAGGAAATACGTTGCATGAACCCGAACTATACAGAGTTTAGGTTTCCACAGATAAAAGCTCACCCTTGGCACAAGgtaagcatacaatcttatccatgttgagtcatatatcacgtcatcttttatagtttcctggacaactatgaaaatgtagctgggctcatttccaataatagattctggacaccagatagctttacaatgcaatgtataaataaggaggtgcatacaggtactgatttttctaacttctgcgtag-------------------

upper sequence: PP1S52_55V6.1 (Physcomitrella patens), 5'ss of exon 9
lower sequence: GRMZM2G138676_T01 (Zea mays), 5'ss of exon 10
GTGTTAGGGACACCTACACGTGAGGAGATAAAGTGCATGAATCCGAACTACACGGAGTTCAAGTTTCCTCAAATTAAGGCTCACCCGTGGCACAAGgtatggtttgtatgtttgggttagctatttttagtggtctattatataatttgataggaattatccgtgtcctcgatattggtgattttgaatttggttggttggacgctgctactcgttgtgattgggagaatggagcgtgttgcattgaccttagcaacgtgcgaattgattggttctgtggtggcag
|| || || || || ||| | || ||||| ||||||||||| || ||||| |||||||||||||| || |||||||| ||||| |||||||||||||||     | ||    | | | |  ||  | |        |   |    | |    ||||||| | | |    | | || | ||  |    || ||       |                                                                                      
GTTTTGGGTACTCCAACAAGGGAAGAGATCAAGTGCATGAACCCAAACTATACGGAGTTCAAGTTCCCACAAATTAAAGCTCATCCGTGGCACAAGgtaattaatatacaaatagataatttagctctgtatcatcacagtgatgtctagctggaattaactg-gcatacaaaatggatgcgt---gatatgcacaaacg--------------------------------------------------------------------------------------

upper sequence: PP1S52_55V6.1 (Physcomitrella patens), 5'ss of exon 9
lower sequence: GRMZM2G045330_T02 (Zea mays), 5'ss of exon 9
GTGTTAGGGACACCTACACGTGAGGAGATAAAGTGCATGAATCCGAACTACACGGAGTTCAAGTTTCCTCAAATTAAGGCTCACCCGTGGCACAAGgtatggtttgtatgtttgggttagctatttttagtggtctattatataatttg---ataggaattat--ccgtgtcctcgatattggtgattttgaatttggttggttggacgctgct--actcgttgtgattgggagaatggagcgtgttgcattgaccttagcaacgtgcgaattgattggttctgtggtggcag----------
||  | || || || || ||||||||||||  |||||||||||| ||||| || ||||||| ||||||||| || |||||||| || |||||||||||||   |  ||||||       | |  | ||     ||||||||  | |||      ||| | | |    || | || |   |      |    ||| |  |     || |||||    ||| ||| ||      | |  | | | |   ||   ||    | |||  | | || ||||   |    |    |             
GTTCTTGGTACTCCAACCCGTGAGGAGATACGGTGCATGAATCCCAACTATACTGAGTTCAGGTTTCCTCAGATAAAGGCTCATCCATGGCACAAGgtat---tcatatgttaaatcatgtttctgttcaca-tctattatccattttacctgcaggtactgtagttgtatacttgtagtccacagtccaaaatgttttcaaa-gggcgctgaagaacttgtt-tgcagatcatatcgaaactttgagctcagaatgcatcaat-tactaactgatgcctctactttccgttttatcctccag

upper sequence: PP1S52_55V6.1 (Physcomitrella patens), 5'ss of exon 9
lower sequence: GRMZM2G472625_T01 (Zea mays), 5'ss of exon 9
GTGTTAGGGACACCTACACGTGAGGAGATAAAGTGCATGAATCCGAACTACACGGAGTTCAAGTTTCCTCAAATTAAGGCTCACCCGTGGCACAAGgtatggtttgtatgtttgggttagctatttttagtggtctattatataatttgataggaattatccgtgtcctcgatattggtgattttgaatttggttggttggacgctgctactcgttgtgattgggagaatggagcgtgttgcattgaccttagcaacgtgcgaattgattggttctgtggtggcag
||  | || || || || ||||||||||||   ||||||||||| ||||| || ||||||| ||||||||| || |||||||| ||||||||||||||||   |  ||||||    | |  | | | |     ||||| ||   |||| |   | |    | ||       ||| | ||         |       |||                                                                                       
GTTCTTGGTACTCCAACCCGTGAGGAGATACGATGCATGAATCCCAACTATACTGAGTTCAGGTTTCCTCAGATAAAGGCTCATCCGTGGCACAAGgtat---tcttatgttaaaatcatgtttctgtccacatctatgattccatttcaccagcagctactgtagttat-atacttgtagcccacggtccaaaatgtta--------------------------------------------------------------------------------------

upper sequence: PP1S52_55V6.1 (Physcomitrella patens), 5'ss of exon 9
lower sequence: GRMZM2G121790_T01 (Zea mays), 5'ss of exon 9
GTGTTAGGGACACCTACACGTGAGGAGATAAAGTGCATGAATCCGAACTACACGGAGTTCAAGTTTCCTCAAATTAAGGCTCACCCGTGGCACAAGgtatggtttgtatgtttgggttagctatttttagtggtctattatataatttgataggaattatccgtgtcctcgatattggtgattttgaatttggttggttggacgctgctactcgttgtgattgggagaatggagcgtgttgcattgaccttagcaacgtgcgaattgattggttctgtggtggcag
||  | || || || || || ||||| ||    || |||||||| |||||||| ||||| |  |||||||| || || |||||||| ||||||||||||||     | | |||   | |  |  | | | ||   |  || | || || |    || || |  ||  || |                                                                                                                   
GTTCTTGGTACCCCAACGCGCGAGGAAATCCGATGTATGAATCCAAACTACACCGAGTTTAGATTTCCTCAGATCAAAGCTCACCCATGGCACAAGgtatgtgaaatttattta--tcatgttatatcattgaa-tggtagaaaacttaaactaaaatacctttgctcttgcag----------------------------------------------------------------------------------------------------------------

upper sequence: PP1S52_55V6.1 (Physcomitrella patens), 5'ss of exon 9
lower sequence: GRMZM2G151916_T01 (Zea mays), 5'ss of exon 9
GTGTTAGGGACACCTACACGTGAGGAGATAAAGTGCATGAATCCGAACTACACGGAGTTCAAGTTTCCTCAAATTAAGGCTCACCCGTGGCACAAGgtatggtttgtatgtttgggttagctatttttagtggtctattatataatttgataggaattatccgtgtcctcgatattggtgattttgaatttggttggttggacgctgctactcgttgtgattgggagaatggagcgtgttgcattgaccttagcaacgtgcgaattgattggttctgtggtggcag
||  | || || || ||||||||||| ||    || |||||||| |||||||| ||||| |  |||||||| || || |||||||| ||||||||||||||     | | |||    |  |  | || | || |  || |  |||   || |  |  | | | |||    |                                                                                                                   
GTTCTTGGTACTCCAACACGTGAGGAAATCCGTTGTATGAATCCAAACTACACCGAGTTTAGATTTCCTCAGATCAAAGCTCACCCATGGCACAAGgtatgcaaaatttattta---tcacgttattcaatgatacataacttaaaacgaaaatacctttac-tgttgcag-------------------------------------------------------------------------------------------------------------------

upper sequence: PP1S52_55V6.1 (Physcomitrella patens), 5'ss of exon 9
lower sequence: GRMZM5G835235_T03 (Zea mays), 5'ss of exon 9
GTGTTAGGGACACCTACACGTGAGGAGATAAAGTGCATGAATCCGAACTACACGGAGTTCAAGTTTCCTCAAATTAAGGCTCACCCGTGGCACAAGgtatggtttgtatgtttgggttagctatttttagtggtctattatataatttgataggaattatccgtgtcctcgatattggtgattttgaatttggttggttggacgctgctactcgttgtgattgggagaatggagcgtgttgcattgaccttagcaacgtgcgaattgattggttctgtggtggcag
||  | || || || ||| | || || || || |||||||| ||||| ||||| ||||| ||||| || ||||| || |||||||| ||||||||||| |  ||| |   | |   ||     ||| || || ||||  | |    ||| ||    ||  |    | |    | ||||  |||||   |||                                                                                               
GTCCTTGGTACTCCAACAAGGGAAGAAATTAAATGCATGAACCCGAATTACACAGAGTTTAAGTTCCCACAAATCAAAGCTCACCCATGGCACAAGgtgtaattttt---tctacattt----tttataatgttctaaaaaaactgttgctaccggtttactaactgcct--ttttggatattttatctttcag--------------------------------------------------------------------------------------------

upper sequence: PP1S52_55V6.1 (Physcomitrella patens), 5'ss of exon 9
lower sequence: GRMZM2G155836_T01 (Zea mays), 5'ss of exon 10
GTGTTAGGGACACCTACACGTGAGGAGATAAAGTGCATGAATCCGAACTACACGGAGTTCAAGTTTCCTCAAATTAAGGCTCACCCGTGGCACAAGgtatggtttgtatgtttgggttagctatttttagtggtctattatataatttgataggaattatccgtgtcctcgatattggtgattttgaatttggttggttggacgctgctactcgttgtgattgggagaatggagcgtgttgcattgaccttagcaacgtgcgaattgattggttctgtggtggcag
||  | || ||||| |||||||| || || |||||||||||||| || || || ||||| || || || ||||| || |||||||| ||||| |||||| || || | | || || ||   |    |   |   || |     |  |  |      ||  |    || || ||    ||  || ||   | |                                                                                              
GTTCTGGGCACACCCACACGTGAAGAAATTAAGTGCATGAATCCAAATTATACCGAGTTTAAATTCCCGCAAATCAAAGCTCACCCATGGCATAAGgtagggattttgtatt-ggattgtgtgccctctctt-cctgtccctaacctccaccaaggttgac---atcttccattgatgtctttctgtgctag----------------------------------------------------------------------------------------------

upper sequence: PP1S52_55V6.1 (Physcomitrella patens), 5'ss of exon 9
lower sequence: GRMZM2G477073_T01 (Zea mays), 5'ss of exon 5
GTGTTAGGGACACCTACACGTGAGGAGATAAAGTGCATGAATCCGAACTACACGGAGTTCAAGTTTCCTCAAATTAAGGCTCACCCGTGGCACAAGgtatggtttgtatgtttgggttagctatttttagtggtctattatataatttgataggaattatccgtgtcctcgatattggtgattttgaatttggttggttggacgctgctactcgttgtgattgggagaatggagcgtgttgcattgaccttagcaacgtgcgaattgattggttctgtggtggcag
||  | || ||||| |||||||| || || |||||||||||||| || || |  ||||| || || || ||||| || |||||||||||||| |||||| |  || | | || |  || |     | |  |   || |     |  |  |      ||  |    || ||   |||| ||  |||  ||   | | |                                                                                         
GTTCTGGGCACACCCACACGTGAAGAAATTAAGTGCATGAATCCAAATTATATCGAGTTTAAATTCCCGCAAATCAAAGCTCACCCGTGGCATAAGgtaggaattttgtattggattttgtgccctctctt--cctgtccctaacctccaccaaggttgac---atcttc--cattgatgtctttctat---gctag-----------------------------------------------------------------------------------------

upper sequence: PP1S52_55V6.1 (Physcomitrella patens), 5'ss of exon 9
lower sequence: GLYMA07G08320.1 (Glycine max), 5'ss of exon 10
GTGTTAGGGACACCTACACGTGAGGAGATAAAGTGCATGAATCCGAACTACACGGAGTTCAAGTTTCCTCAAATTAAGGCTCACCCGTGGCACAAGgtatggtttgtatgtttgggttagctatttttagtggtctattatataatttgat--aggaattatccgtgtcctcgatattggtgattttgaatttggttggttggacgctgctactcgttgtgattgggagaatggagcgtgttgcattgaccttagcaacgtgcgaattgattggttctgtggtggcag
|| || || ||||| ||  | || || |||| |||||||||||| |||||||  || || ||||||||||| ||||| |||||||| |||||||||||  |   |   |  ||  | | ||||| |      ||  |||||||||| | ||  |  ||| ||   |     |  |          |  ||  ||| |    |                                                                                      
GTCTTGGGAACACCCACCAGAGAAGAAATAAGGTGCATGAATCCAAACTACAATGAATTTAAGTTTCCTCAGATTAAAGCTCACCCATGGCACAAGgttagcagttctttcttctgct-gctatctgctaaagt--attatataatataatccataaatgataaatacttccattcagacctgactgaaaactggcttccag--------------------------------------------------------------------------------------

upper sequence: PP1S52_55V6.1 (Physcomitrella patens), 5'ss of exon 9
lower sequence: GLYMA10G01280.2 (Glycine max), 5'ss of exon 10
GTGTTAGGGACACCTACACGTGAGGAGATAAAGTGCATGAATCCGAACTACACGGAGTTCAAGTTTCCTCAAATTAAGGCTCACCCGTGGCACAAGgtatggtt-tgtatgtttgggttagctatttttagtggtctattatataatttgataggaattatccgtgtcctcgatattggtgattttgaatttggttggttggacgctgctactcgttgtgattgggagaatggagcgtgttgcattgaccttagcaacgtgcgaattgattggttctgtggtggcag
|| ||||| || || ||| | || || || |||||||||||||| || || || |||| ||| ||||| |||||||| |||||||| |||||||||||||  |  |||   ||| |  |  ||||||  | || | | | || ||   |  |   |  |||  |   | ||    |  |                                                                                                            
GTTTTAGGTACCCCAACAAGGGAAGAAATCAAGTGCATGAATCCTAATTATACCGAGTCCAAATTTCCACAAATTAAAGCTCACCCATGGCACAAGgtattataatgttatttttgcatgtctatttaca-tgttatttcat-tatgatattcatatatatatgaaccttcatcttcag------------------------------------------------------------------------------------------------------------

upper sequence: PP1S52_55V6.1 (Physcomitrella patens), 5'ss of exon 9
lower sequence: GLYMA03G38850.2 (Glycine max), 5'ss of exon 10
GTGTTAGGGACACCTACACGTGAGGAGATAAAGTGCATGAATCCGAACTACACGGAGTTCAAGTTTCCTCAAATTAAGGCTCACCCGTGGCACAAGgtatggtttgtatgtttgggttagctatttttagtggtctattatata-atttgataggaattatccgtgtcctcgatattggtgattttgaatttggttggttggacgctgctactcgttgtgattgggagaatggagcgtgttgcattgaccttagcaacgtgcgaattgattggttctgtggtggcag
||  | || || || ||| | || |||||||||||||||||||| ||||||||||| || || || || || ||||| || || || |||||||||||||      ||  |||    ||||  ||  | ||  | || | |||  |    |  | || ||    | |      ||    |  | |||  ||| |        || ||| ||    |  ||||| ||    |  ||                                                    
GTTCTGGGAACTCCAACAAGGGAAGAGATAAAGTGCATGAATCCTAACTACACGGAATTTAAATTCCCACAGATTAAAGCGCATCCATGGCACAAGgtatcacaaataaatttaa--tagcctttcgt-gttttatactttattcaccatagtgaaaatactaatatatctagtaac--ttgtcttg--tttagcgcacc--acactgataaatttgttgatttggtccttctag----------------------------------------------------

upper sequence: PP1S52_55V6.1 (Physcomitrella patens), 5'ss of exon 9
lower sequence: GLYMA03G01850.1 (Glycine max), 5'ss of exon 10
GTGTTAGGGACACCTACACGTGAGGAGATAAAGTGCATGAATCCGAACTACACGGAGTTCAAGTTTCCTCAAATTAAGGCTCACCCGTGGCACAAGgtatggtttgtatgtttgggttagctatttttagtggtctattatataatttgat--aggaattatccgtgtcctcgatattggtgattttgaatttggttggttggacgctgctactcgttgtgattgggagaatggagcgtgttgcattgaccttagcaacgtgcgaattgattggttctgtggtggcag
 | || || ||||| ||  | || || |||| |||||||||||| |||||||  || || ||||||||||| || || |||||||| |||||||||||  |   |   |   |  | | ||||  |      || |  ||| |||| | ||  |  ||| ||   |     |  |          |  ||  ||| |    |                                                                                      
ATTTTGGGAACACCCACCAGAGAAGAAATAAGGTGCATGAATCCAAACTACAATGAATTTAAGTTTCCTCAGATCAAAGCTCACCCATGGCACAAGgttagcagttctttcctctgct-gctacctgctaaagtattatatgtaatataatccataaatgataaatacttccattcagacctgactgaaaactggcttccag--------------------------------------------------------------------------------------

upper sequence: PP1S52_55V6.1 (Physcomitrella patens), 5'ss of exon 9
lower sequence: GLYMA09G40150.1 (Glycine max), 5'ss of exon 10
GTGTTAGGGACACCTACACGTGAGGAGATAAAGTGCATGAATCCGAACTACACGGAGTTCAAGTTTCCTCAAATTAAGGCTCACCCGTGGCACAAGgtatggtttgtatgtttgggttagctatttttagtg---gtctattatataatttgataggaattatccgtgtcctcgatattggtgattttgaatttggttggttggacgctgctactcgttgtgattgggagaatggagcgtgttgcattgaccttagcaacgtgcgaattgattggttctgtggtggcag
 | || || ||||| ||  | || || ||||||||||||||||| || ||||| || || ||||||||||| || || || ||||| ||||| ||||| | |    | | |       |  | ||    | |    |  | | | ||||| ||||  |||  | |  |||   ||| |   ||||| |  || |                                                                                               
ATCTTGGGAACACCAACCAGAGAAGAAATAAAGTGCATGAATCCAAATTACACCGAATTTAAGTTTCCTCAGATAAAAGCACACCCATGGCATAAGgt-tagcaattctttactccccatttgttcccggagtatattcaatttgtaatt-gata--aatagttccagtcagagatctgattgattatttatatcag--------------------------------------------------------------------------------------------

upper sequence: PP1S52_55V6.1 (Physcomitrella patens), 5'ss of exon 9
lower sequence: GLYMA18G45960.1 (Glycine max), 5'ss of exon 10
GTGTTAGGGACACCTACACGTGAGGAGATAAAGTGCATGAATCCGAACTACACGGAGTTCAAGTTTCCTCAAATTAAGGCTCACCCGTGGCACAAGgtatggtttgtatgtttgggttagctatttttagtg-gtctattatataatttgataggaattatccgtgtcctcgatattggtgatt--ttgaatttggttggttggacgctgctactcgttgtgattgggagaatggagcgtgttgcattgaccttagcaacgtgcgaattgattggttctgtggtggcag
 | || || ||||| ||  | || || ||||||||||||||||| || ||||| || || ||||||||||| || || || ||||| ||||| ||||| | |  | | | |     | |  |  |  | | |  |  | | | ||||| ||||  |||  | |  |||   ||| |    ||||  ||  ||  ||                                                                                             
-TCTTGGGAACACCGACCAGAGAAGAAATAAAGTGCATGAATCCAAATTACACCGAATTTAAGTTTCCTCAGATAAAAGCACACCCATGGCATAAGGt-tagcatttttttactcctcatttgctcctggagtatgcaatttgtaatt-gata--aatacttccagtcagagatctgatcgattatttatatcagg---------------------------------------------------------------------------------------------

upper sequence: PP1S52_55V6.1 (Physcomitrella patens), 5'ss of exon 9
lower sequence: AT4G00720.1 (Arabidopsis thaliana), 5'ss of exon 10
GTGTTAGGGACACCTACACGTGAGGAGATAAAGTGCATGAATCCGAACTACACGGAGTTCAAGTTTCCTCAAATTAAGGCTCACCCGTGGCACAAGgtatggtttgtatgtttgggttagctatttttagtggtctattatataatttgataggaattatccgtgtcctcgatattggtgattttgaatttggttggttggacgctgctactcgttgtgattgggagaatggagcgtgttgcattgaccttagcaacgtgcgaattgattggttctgtggtggcag
 |  | ||||| |||||| | || || |||  ||| ||||||||||| ||||| |||||||||||||||||||| || |||||||||||||||||||| ||  ||  ||  | |    || |   | |  ||||   |    |  ||  |  | ||||    ||  | |  |  |                                                                                                               
ATTCTTGGGACGCCTACAAGAGAAGAAATACGGTGTATGAATCCGAATTACACAGAGTTCAAGTTTCCTCAAATCAAAGCTCACCCGTGGCACAAGgtttg--ttaaataatcg---caggtgcctctt-tggtgcgtgtgcttgttcaaatgaaatttaatgtagcatataactcttcag---------------------------------------------------------------------------------------------------------

upper sequence: PP1S52_55V6.1 (Physcomitrella patens), 5'ss of exon 9
lower sequence: AT1G57870.1 (Arabidopsis thaliana), 5'ss of exon 11
GTGTTAGGGACACCTACACGTGAGGAGATAAAGTGCATGAATCCGAACTACACGGAGTTCAAGTTTCCTCAAATTAAGGCTCACCCGTGGCACAAGgtatg--gtttgtatgtttgggttagctatttttagtggtctattatataatttgataggaattatccgtgtcctcgatattggtgattttgaatttggttggttggacgctgctactcgttgtgattgggagaatggagcgtgttgcattgaccttagcaacgtgcgaattgattggttctgtggtggcag
|| || || ||||| ||| | |||||||| || ||||||||||| |||||||| || || || |||||||| || ||  |||| || |||||||||||||   | | ||| || |   ||| |   |  ||| | ||| |||    ||   ||| ||   | |  |||| ||| | || ||||  |||| |   ||   |  |                                                                                     
GTTTTGGGTACACCAACAAGGGAGGAGATCAAATGCATGAATCCAAACTACACAGAATTTAAATTTCCTCAGATAAAACCTCATCCTTGGCACAAGgtataccgctagta-gtatcaattatcacctaatagggttctcttaatcgat---atatgaccaagct-tgtc-tcggt-ttagtgaggttgattgaagtatatgtg-------------------------------------------------------------------------------------

upper sequence: PP1S52_55V6.1 (Physcomitrella patens), 5'ss of exon 9
lower sequence: Vv15s0048g02010.t01 (Vitis vinifera), 5'ss of exon 10
GTGTTAGGGACACCTACACGTGAGGAGATAAAGTGCATGAATCCGAACTACACGGAGTTCAAGTTTCCTCAAATTAAGGCTCACCCGTGGCACAAGgtatggtttgtatgtttgggttagctatttttagtggtctattatataatttgataggaattatccgtgtcctcgatattggtgattttgaatttggttggttggacgctgctactcgttgtgattgggagaatggagcgtgttgcattgaccttagcaacgtgcgaattgattggttctgtggtggcag
 |  | || ||||| ||  | || || || |||||||||||||| || ||||  |||||||||||||| ||||| || |||||||| ||||||||||| ||               | | | ||| | |  |||  || ||||    ||   |  || |           |||||| |  |  ||  ||||   | |    | |||  |    ||| || ||   ||                                                           
ATTCTGGGTACACCCACCAGAGAAGAAATTAAGTGCATGAATCCAAATTACAATGAGTTCAAGTTTCCACAAATCAAAGCTCACCCATGGCACAAGgtttg---------------tcaacaattctaaagggtagatcatatctgctgcccgacatcact---------gatatttgataaattatatttctatagccaaaagcttatttaagttttgttttccag-----------------------------------------------------------

upper sequence: PP1S52_55V6.1 (Physcomitrella patens), 5'ss of exon 9
lower sequence: Vv14s0066g01050.t01 (Vitis vinifera), 5'ss of exon 10
GTGTTAGGGACACCTACACGTGAGGAGATAAAGTGCATGAATCCGAACTACACGGAGTTCAAGTTTCCTCAAATTAAGGCTCACCCGTGGCACAAGgtatggtttgtatgtttgggttagctatttt--tagtggtctattatataatttg-ataggaattatccgtgtcctcgatattggtgattttgaatttggttggttggacgctgctactcgttgtgattgggagaatggagcgtgttgcattgaccttagcaacgtgcgaattgattggttctgtggtggcag
||  | ||||| || || |||||||| || ||||| |||||||| ||||| || ||||| || || || ||||| ||||||||||| |||||||||||  | | |  || | |       | ||||   || | |    || |  | |||| || | | ||||| |        || ||      |||| |                                                                                                  
GTACTTGGGACGCCAACTCGTGAGGAAATCAAGTGTATGAATCCAAACTATACTGAGTTTAAATTCCCACAAATCAAGGCTCACCCCTGGCACAAGgtgagctcttgatttctataccgaccatttcaataattgatgcttttggattttgtatcgaatttatctgaa-----aatgttctcttgtttgcag-------------------------------------------------------------------------------------------------

upper sequence: PP1S52_55V6.1 (Physcomitrella patens), 5'ss of exon 9
lower sequence: Vv14s0060g00600.t01 (Vitis vinifera), 5'ss of exon 10
GTGTTAGGGACACCTACACGTGAGGAGATAAAGTGCATGAATCCGAACTACACGGAGTTCAAGTTTCCTCAAATTAAGGCTCACCCGTGGCACAAGgtatggtttgtatgtttgggt---tagctatttttagtggtctattatataatttgataggaattatccgtgtcctcgatattggtgattttgaatttggttggttggacgctgctactcgttgtgattgggagaatggagcgtgttgcattgaccttagcaacgtgcgaattgattggttctgtggtggcag
|| || || || || ||| | ||||| || || |||||||| || ||||| || |||||||| || || |||||||| |||||||| ||||||||||||       |     |   |   ||  || |||   |     ||  ||| ||    |   | |||| | | |||| | |    |                                                                                                            
GTTTTGGGCACTCCAACAAGGGAGGAAATTAAATGCATGAACCCCAACTATACAGAGTTCAAATTCCCCCAAATTAAAGCTCACCCATGGCACAAGgtactagaaatcaaagtaaatgcatatatagtttgtttctctcatcttatcataaatttttatttattcatatccttgttgccag------------------------------------------------------------------------------------------------------------

upper sequence: PP1S52_55V6.1 (Physcomitrella patens), 5'ss of exon 9
lower sequence: Vv12s0035g01060.t01 (Vitis vinifera), 5'ss of exon 9
GTGTTAGGGACACCTACACGTGAGGAGATAAAGTGCATGAATCCGAACTACACGGAGTTCAAGTTTCCTCAAATTAAGGCTCACCCGTGGCACAAGgtatggtttgtatgtttgggttagctatttttagtggtctattatataatttgataggaattatccgtgtcctcgatattggtgattttgaatttggttggttggacgctgctactcgttgtgattgggagaatggagcgtgttgcattgaccttagcaacgtgcgaattgattggttctgtggtggcag
|| || || ||||||||  | ||||||||||| || |||||||| |||||||| || || || || || ||||| ||| |||| || |||||||||||||| | | |   |||   ||    |   | |||  || | | |||   |  ||     |  ||  | ||  |             |     |                                                                                                
GTCTTGGGAACACCTACCAGGGAGGAGATAAAATGTATGAATCCAAACTACACCGAATTTAAATTCCCACAAATAAAGCCTCATCCATGGCACAAGgtatgctctttccctttcctttgaa-accataagt--tcaaatgtatctgtcaatgtttgtgctctctttctccctctccctctccctctccctccacccacc---------------------------------------------------------------------------------------

upper sequence: PP1S52_55V6.1 (Physcomitrella patens), 5'ss of exon 9
lower sequence: Vv07s0005g02100.t01 (Vitis vinifera), 5'ss of exon 10
GTGTTAGGGACACCTACACGTGAGGAGATAAAGTGCATGAATCCGAACTACACGGAGTTCAAGTTTCCTCAAATTAAGGCTCACCCGTGGCACAAGgtatggtttgtatgtttgg-gttagctatttttagtggtctattatataatttgataggaatt-atccgtgtcctcgatattggtgattttgaatttggttggttggacgctgctactcgttgtgattgggagaatggagcgtgttgcattgaccttagcaacgtgcgaattgattggttctgtggtggcag
|| || || || || ||| | ||||| || |||||||||||||| || ||||| || || || || || |||||||| || ||||| ||||||||||||  |  |  | |   |   |||  |   ||  |   |   |  || ||  | |     ||| ||     | ||   | |   |  | |                                                                                                      
GTTTTGGGCACCCCAACAAGAGAGGAAATTAAGTGCATGAATCCCAATTACACAGAATTTAAATTCCCACAAATTAAAGCCCACCCATGGCACAAGgtactggatagaagcaggatattacttcaattctgctatgcttcttacaacctcacgaatattgattttcattcttattgtacctcctatcag---------------------------------------------------------------------------------------------------

upper sequence: PP1S52_55V6.1 (Physcomitrella patens), 5'ss of exon 9
lower sequence: EFJ07923 (Selaginella moellendorffii), 5'ss of exon 10
GTGTTAGGGACACCTACACGTGAGGAGATAAAGTGCATGAATCCGAACTACACGGAGTTCAAGTTTCCTCAAATTAAGGCTCACCCGTGGCACAAGgtatggtttgtatgtttgggttagctatttttagtggtctatt-atataatttgataggaattatccgtgtcctcgatattggtgattttgaatttggttggttggacgctgctactcgttgtgattgggagaatggagcgtgttgcattgaccttagcaacgtgcgaattgattggttctgtggtggcag
|| ||||| || ||||| || ||||| || || ||||||||||| |||||||||||||| ||||| ||||| ||||| || || || |||||||||||| |     |   |  ||  || || | | |     ||| || || |   | | |   |                                                                                                                                   
GTCTTAGGTACTCCTACTCGGGAGGAAATCAAATGCATGAATCCAAACTACACGGAGTTTAAGTTCCCTCAGATTAAAGCGCATCCCTGGCACAAGgtaagagcaat-catccggtatatctctctctctgtctctcttgatgtggctcgttgacag----------------------------------------------------------------------------------------------------------------------------------

upper sequence: PP1S52_55V6.1 (Physcomitrella patens), 5'ss of exon 9
lower sequence: EFJ07216 (Selaginella moellendorffii), 5'ss of exon 10
GTGTTAGGGACACCTACACGTGAGGAGATAAAGTGCATGAATCCGAACTACACGGAGTTCAAGTTTCCTCAAATTAAGGCTCACCCGTGGCACAAGgtatggtttgtatgtttgggttagctatttttagtggtctatt-atataatttgataggaattatccgtgtcctcgatattggtgattttgaatttggttggttggacgctgctactcgttgtgattgggagaatggagcgtgttgcattgaccttagcaacgtgcgaattgattggttctgtggtggcag
|| ||||| || ||||| || ||||| || || ||||||||||| |||||||||||||| ||||| ||||| ||||| || || || |||||||||||| |     |   |  ||  || || | | |     ||| || || |   | | |   |                                                                                                                                   
GTCTTAGGTACTCCTACTCGCGAGGAAATCAAATGCATGAATCCAAACTACACGGAGTTTAAGTTCCCTCAGATTAAAGCGCATCCCTGGCACAAGgtaagagcaat-catccggtatatctctctctctgtctctcttgatgtggctcgttgacag----------------------------------------------------------------------------------------------------------------------------------

upper sequence: PP1S52_55V6.1 (Physcomitrella patens), 5'ss of exon 9
lower sequence: EFJ04915 (Selaginella moellendorffii), 5'ss of exon 9
GTGTTAGGGACACCTACACGTGAGGAGATAAAGTGCATGAATCCGAACTACACGGAGTTCAAGTTTCCTCAAATTAAGGCTCACCCGTGGCACAAGgtatggtttgtatgtttgggttagctatttttagtggtctattatataatttgataggaattatccgtgtcctcgatattggtgattttgaatttggttggttggacgctgctactcgttgtgattgggagaatggagcgtgttgcattgaccttagcaacgtgcgaattgattggttctgtggtggcag
||  | || || ||||| || |||||||| ||||| |||||||| ||||||||||| |||||||| |||||||| ||||| ||||| |||||||||||  |      |  | |  ||| |         || || ||     |||  ||  ||                                                                                                                                     
GTTCTTGGAACCCCTACTCGCGAGGAGATCAAGTGTATGAATCCCAACTACACGGAATTCAAGTTCCCTCAAATCAAGGCCCACCCTTGGCACAAGgtgcgtaggcaacttctttgttgg-----ggcggtcgtttacgtagtaacgtggcag-------------------------------------------------------------------------------------------------------------------------------------

upper sequence: PP1S52_55V6.1 (Physcomitrella patens), 5'ss of exon 9
lower sequence: EFJ10962 (Selaginella moellendorffii), 5'ss of exon 9
GTGTTAGGGACACCTACACGTGAGGAGATAAAGTGCATGAATCCGAACTACACGGAGTTCAAGTTTCCTCAAATTAAGGCTCACCCGTGGCACAAGgtatggtttgtatgtttgggttagctatttttagtggtctattatataatttgataggaattatccgtgtcctcgatattggtgattttgaatttggttggttggacgctgctactcgttgtgattgggagaatggagcgtgttgcattgaccttagcaacgtgcgaattgattggttctgtggtggcag
||  | || || ||||| || |||||||| ||||| |||||||| ||||||||||| |||||||| |||||||| ||||| || || |||||||||||  |      |  | |  ||| |         || || ||     |||  ||  ||                                                                                                                                     
GTTCTTGGAACCCCTACTCGCGAGGAGATCAAGTGTATGAATCCCAACTACACGGAATTCAAGTTCCCTCAAATCAAGGCCCATCCTTGGCACAAGgtgcgtaggcaacttctttgttgg-----ggcggtcgtttacgtagtaacgtggcag-------------------------------------------------------------------------------------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162199399|gb|FC373740.1|FC373740
EST:     ACTACACGGAGTTCAAGTTTCCTCAAATTAAGGCTCACCCGTGGCACAAG                         GTTTTCCACAAACGCATGCCTTCAGAAGCAGTGGACCTGGTTTCAAGACTG
genomic: ACTACACGGAGTTCAAGTTTCCTCAAATTAAGGCTCACCCGTGGCACAAGgtatggtttg ... gtggtggcagGTTTTCCACAAACGCATGCCTTCAGAAGCAGTGGACCTGGTTTCAAGACTG




















RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 34 (upstream exon), 35 (downstream exon)
Score: 14

GTGTTAGGGACACCTACACGTGAGGAGATAAAGTGCATGAATCCGAACTACACGGAGTTCAAGTTTCCTCAAATTAAGGCTCACCCGTGGCACAAGgtatggtttg ... gtggtggcagGTTTTCCACAAACGCATGCCTTCAGAAGCAGTGGACCTGGTTTCAAGACTGCTACAGTACTCCCCAAATCTGCGGTGCAACGCT




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