1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
GTTTGATAAGAAGTTTGCAGCTCAAGTGGCAAAGGAGACAGGATTACCATTTGTTACAGCTCCAAACAAGTTTGAAGCATTGgtacgatttcttctactggtctcggctactagcatcttcaatcctcaactttgtggagcagcgattatgtcgagtcgcggcctaatgtttttgctgcatgtctgcacag
species | Physcomitrella patens |
transcript | PP1S49_154V6.1 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: AGGAGACAGGATTACCATTTGTTACAGCTCCAAACAAGTTTGAAGCATTG GCAGCTCATGACGCTATTGTAGAATGTAGTGGTGCACTCAACACTGTAGCTEST: gi|162169177|gb|FC345144.1|FC345144
genomic: AGGAGACAGGATTACCATTTGTTACAGCTCCAAACAAGTTTGAAGCATTGgtacgatttc ... gtctgcacagGCAGCTCATGACGCTATTGTAGAATGTAGTGGTGCACTCAACACTGTAGCT
EST: AGGAGACAGGATTACCATTTGTTACAGCTCCAAACAAGTTTGAAGCATTG GCAGCTCATGACGCTATTGTAGAATGTAGTGGTGCACTCAACACTGTAGCTEST: gi|7047501|gb|AW477395.1|AW477395
genomic: AGGAGACAGGATTACCATTTGTTACAGCTCCAAACAAGTTTGAAGCATTGgtacgatttc ... gtctgcacagGCAGCTCATGACGCTATTGTAGAATGTAGTGGTGCACTCAACACTGTAGCT
EST: AGGAGACAGGATTACCATTTGTTACAGCTCCAAACAAGTTTGAAGCATTG GCAGCTCATGACGCTATTGTAGAATGTAGTGGTGCACTCAACACTGTAGCTEST: gi|67569924|gb|BJ942748.1|BJ942748
genomic: AGGAGACAGGATTACCATTTGTTACAGCTCCAAACAAGTTTGAAGCATTGgtacgatttc ... gtctgcacagGCAGCTCATGACGCTATTGTAGAATGTAGTGGTGCACTCAACACTGTAGCT
EST: AGGAGACAGGATTACCATTTGTTACAGCTCCAAACAAGTTTGAAGCATTG GCAGCTCATGACGCTATTGTAGAATGTAGTGGTGCACTCAACACTGTAGCTEST: gi|162170412|gb|FC347610.1|FC347610
genomic: AGGAGACAGGATTACCATTTGTTACAGCTCCAAACAAGTTTGAAGCATTGgtacgatttc ... gtctgcacagGCAGCTCATGACGCTATTGTAGAATGTAGTGGTGCACTCAACACTGTAGCT
EST: AGGAGACAGGATTACCATTTGTTACAGCTCCAAACAAGTTTGAAGCATTG GCAGCTCATGACGCTATTGTAGAATGTAGTGGTGCACTCAACACTGTAGCTEST: gi|162193053|gb|FC371477.1|FC371477
genomic: AGGAGACAGGATTACCATTTGTTACAGCTCCAAACAAGTTTGAAGCATTGgtacgatttc ... gtctgcacagGCAGCTCATGACGCTATTGTAGAATGTAGTGGTGCACTCAACACTGTAGCT
EST: AGGAGACAGGATTACCATTTGTTACAGCTCCAAACAAGTTTGAAGCATTG GCAGCTCATGACGCTATTGTAGAATGTAGTGGTGCACTCAACACTGTAGCT
genomic: AGGAGACAGGATTACCATTTGTTACAGCTCCAAACAAGTTTGAAGCATTGgtacgatttc ... gtctgcacagGCAGCTCATGACGCTATTGTAGAATGTAGTGGTGCACTCAACACTGTAGCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTTGATAAGAAGTTTGCAGCTCAAGTGGCAAAGGAGACAGGATTACCATTTGTTACAGCTCCAAACAAGTTTGAAGCATTGgtacgatttcttctactggtctcggctactagcatcttcaatcctcaactttgtggagcagcgattatgtcgagtcgcggcctaatgtttttgctgcatgtctgcacag
- - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC