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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCCCTGAACTTGAGTTCGGAAACAGGGTCTATCGGGTGCGATTTGACGAGAAATACAGTGAGAAGgtgtgttgtgttattaaaccttgatatataactcagccagtagtcttaacctgcactattattcactcaaactctacgtttaatctcctaatcaaattatccgtaggcaacatctcaaatgcctacagcaggattatgactaattatgcatcgcaaattcctgaaatatattctcctctctgcag

Basic information

species Physcomitrella patens
transcript PP1S49_100V6.1
intron # 9
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37845513|gb|BJ603521.1|BJ603521
EST:     TCGGAANCAGGNTCTATCGGGTGCGATTTGACGAGAAATACAGTGAGAAG                         CAATTCCCATCATCAACACCTTTATGGAATTCAGTACGAGTTTCATTTAGA
genomic: TCGGAAACAGGGTCTATCGGGTGCGATTTGACGAGAAATACAGTGAGAAGgtgtgttgtg ... ctctctgcagCAATTCCCATCATCAACACC-TTATGGAATTCAGTACGAGTTTCATTTAGA
EST: gi|37851526|gb|BJ609534.1|BJ609534
EST:     TTTGACGAGAAATACAGTGAGAAG                         CAATTCCCCATCATCAACACCTTATGGAATTCAGTACGAGTTTCATTTAGA
genomic: TTTGACGAGAAATACAGTGAGAAGgtgtgttgtg ... ctctctgcagCAATT-CCCATCATCAACACCTTATGGAATTCAGTACGAGTTTCATTTAGA
EST: gi|208371348|gb|DC944512.1|DC944512
EST:     TCGGAAACAGGGTCTATCGGGTGCGATTNGACGAGAAATACAGTGAGAAG                         CAATTCCCATCATCAACACCTTATGGAATTCAGTACGAGTTTCATTTAGAG
genomic: TCGGAAACAGGGTCTATCGGGTGCGATTTGACGAGAAATACAGTGAGAAGgtgtgttgtg ... ctctctgcagCAATTCCCATCATCAACACCTTATGGAATTCAGTACGAGTTTCATTTAGAG