1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
GCATGCCTCTGGATATAGTAAGAGTTACTGGCTGGAGAAACGATCCGGAGGCGTCACCAGATGAGAAGCCTGAAGTTCGTTATGCAGCATCGTTTGCTGGgtagggatgcatctgaattagacattaattaagttgtgtaaacatagacatttgtggatcttactaccctttgaatgggttgctgattgtatgcgaacacaatgcatgcgctcacagtgtttattgacgatctttttgacag
species | Physcomitrella patens |
transcript | PP1S48_58V6.1 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: GCGTCACCAGATGAGAAGCCTGAAGTTCGTTATGCAGCATCGTTTGCTGG ATATGGTTTCTATGGAGATGTGATGAGGGAAAGCGAGGAATTACGGTGGATEST: gi|162162445|gb|FC339189.1|FC339189
genomic: GCGTCACCAGATGAGAAGCCTGAAGTTCGTTATGCAGCATCGTTTGCTGGgtagggatgc ... tttttgacagATATGGTTTCTATGGAGATGTGATGAGGGAAAGCGAGGAATTACGGTGGAT
EST: GCGTCACCAGATGAGAAGCCTGAAGTTCGTTATGCAGCATCGTTTGCTGG ATATGGTTTCTATGGAGATGTGATGAGGGAAAGCGAGGAATTACGGTGGATEST: gi|162222445|gb|FC398011.1|FC398011
genomic: GCGTCACCAGATGAGAAGCCTGAAGTTCGTTATGCAGCATCGTTTGCTGGgtagggatgc ... tttttgacagATATGGTTTCTATGGAGATGTGATGAGGGAAAGCGAGGAATTACGGTGGAT
EST: GCATCGTTTGCTGG ATATGGTTTCTATGGAGATGTGATGAGGGAAAGCGAGGAATTACGGTGGAT
genomic: GCATCGTTTGCTGGgtagggatgc ... tttttgacagATATGGTTTCTATGGAGATGTGATGAGGGAAAGCGAGGAATTACGGTGGAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCATGCCTCTGGATATAGTAAGAGTTACTGGCTGGAGAAACGATCCGGAGGCGTCACCAGATGAGAAGCCTGAAGTTCGTTATGCAGCATCGTTTGCTGGgtagggatgcatctgaattagacattaattaagttgtgtaaacatagacatttgtggatcttactaccctttgaatgggttgctgattgtatgcgaacacaatgcatgcgctcacagtgtttattgacgatctttttgacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG