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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGGGGTCGGGATAAGACCTATTTCACGAGTGCATTCTCTGGGTACACAGTAGGCCTTCTAGTCACCATTTTGGTGATGAATTTGTTCCAGGCTGCACAGgtatgtcccttggaacagttaatggagtttccaacaattgcaagtgtcttggtcacgtgcaggctgtgttagtgacgcaggtgcatatgttgagtgcacg...

Basic information

species Physcomitrella patens
transcript PP1S47_5V6.1
intron # 9
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37836833|gb|BJ594841.1|BJ594841
EST:     TAGGCCTTCTAGTCACCATTTTGGTGATGAATTTGTTCCAGGCTGCACAG                         CCTGCACTTCTTTACATCGTACCGGGAGTGATCGGGTTTTTGGGCGTCCAT
genomic: TAGGCCTTCTAGTCACCATTTTGGTGATGAATTTGTTCCAGGCTGCACAGgtatgtccct ... catttcgcagCCTGCACTTCTTTACATCGTACCGGGAGTGATCGGGTTTTTGGGCGTCCAT
EST: gi|208363383|gb|DC946981.1|DC946981
EST:     TAGGCCTTCTAGTCACCATTTTGGTGATGAATTTGTTCCAGGCTGCACAG                         CCTGCACTTCTTTACATCGTACCGGGAGTGATCGGGTTTTTGGGCGTCCAT
genomic: TAGGCCTTCTAGTCACCATTTTGGTGATGAATTTGTTCCAGGCTGCACAGgtatgtccct ... catttcgcagCCTGCACTTCTTTACATCGTACCGGGAGTGATCGGGTTTTTGGGCGTCCAT
EST: gi|208385887|gb|DC956725.1|DC956725
EST:     TAGGCCTTCTAGTCACCATTTTGGTGATGAATTTGTTCCAGGCTGCACAG                         CCTGCACTTCTTTACATCGTACCGGGAGTGATCGGGTTTTTGGGCGTCCAT
genomic: TAGGCCTTCTAGTCACCATTTTGGTGATGAATTTGTTCCAGGCTGCACAGgtatgtccct ... catttcgcagCCTGCACTTCTTTACATCGTACCGGGAGTGATCGGGTTTTTGGGCGTCCAT
EST: gi|208353491|gb|DC922503.1|DC922503
EST:     TAGGCCTTCTAGTCACCATTTTGGTGATGAATTTGTTCCAGGCTGCACAG                         CCTGCACTTCTTTACATCGTACCGGGAGTGATCGGGTTTTTGGGCGTCCAT
genomic: TAGGCCTTCTAGTCACCATTTTGGTGATGAATTTGTTCCAGGCTGCACAGgtatgtccct ... catttcgcagCCTGCACTTCTTTACATCGTACCGGGAGTGATCGGGTTTTTGGGCGTCCAT
EST: gi|208364937|gb|DC947079.1|DC947079
EST:     TAGGCCTTCTAGTCACCATTTTGGTGATGAATTTGTTCCAGGCTGCACAG                         CCTGCACTTCTTTACATCGTACCGGGAGTGATCGGGTTTTTGGGCGTCCAT
genomic: TAGGCCTTCTAGTCACCATTTTGGTGATGAATTTGTTCCAGGCTGCACAGgtatgtccct ... catttcgcagCCTGCACTTCTTTACATCGTACCGGGAGTGATCGGGTTTTTGGGCGTCCAT
EST: gi|67696009|gb|BJ956242.1|BJ956242
EST:     TAGGCCTTCTAGTCACCATTTTGGTGATGAATTTGTTCCAGGCTGCACAG                         CCTGCACTTCTTTACATCGTACCGGGAGTGATCGGGTTTTTGGGCGTCCAT
genomic: TAGGCCTTCTAGTCACCATTTTGGTGATGAATTTGTTCCAGGCTGCACAGgtatgtccct ... catttcgcagCCTGCACTTCTTTACATCGTACCGGGAGTGATCGGGTTTTTGGGCGTCCAT
EST: gi|162248338|gb|FC422553.1|FC422553
EST:     TAGGCCTTCTAGTCACCATTTTGGTGATGAATTTGTTCCAGGCTGCACAG                         CCTGCACTTCTTTACATCGTACCGGGAGTGATCGGGTTTTTGGGCGTCCAT
genomic: TAGGCCTTCTAGTCACCATTTTGGTGATGAATTTGTTCCAGGCTGCACAGgtatgtccct ... catttcgcagCCTGCACTTCTTTACATCGTACCGGGAGTGATCGGGTTTTTGGGCGTCCAT
EST: gi|37836672|gb|BJ594680.1|BJ594680
EST:     TAGGCCTTCTAGTCACCATTTTGGTGATGAATTTGTTCCAGGCTGCACAG                         CCTGCACTTCTTTACATCGTACCGGGAGTGATCGGGTTTTTGGGCGTCCAT
genomic: TAGGCCTTCTAGTCACCATTTTGGTGATGAATTTGTTCCAGGCTGCACAGgtatgtccct ... catttcgcagCCTGCACTTCTTTACATCGTACCGGGAGTGATCGGGTTTTTGGGCGTCCAT
EST: gi|37849189|gb|BJ607197.1|BJ607197
EST:     TAGGCCTTCTAGTCACCATTTTGGTGATGAATTTGTTCCAGGCTGCACAG                         CCTGCACTTCTTTACATCGTACCGGGAGTGATCGGGTTTTTGGGCGTCCAT
genomic: TAGGCCTTCTAGTCACCATTTTGGTGATGAATTTGTTCCAGGCTGCACAGgtatgtccct ... catttcgcagCCTGCACTTCTTTACATCGTACCGGGAGTGATCGGGTTTTTGGGCGTCCAT
EST: gi|37826376|gb|BJ584388.1|BJ584388
EST:     TAGGCCTTCTAGTCACCATTTTGGTGATGAATTTGTTCCAGGCTGCACAG                         CCTGCACTTCTTTACATCGTACCGGGAGTGATCGGGTTTTTGGGCGTCCAT
genomic: TAGGCCTTCTAGTCACCATTTTGGTGATGAATTTGTTCCAGGCTGCACAGgtatgtccct ... catttcgcagCCTGCACTTCTTTACATCGTACCGGGAGTGATCGGGTTTTTGGGCGTCCAT
EST: gi|162211219|gb|FC386931.1|FC386931
EST:     TAGGCCTTCTAGTCACCATTTTGGTGATGAATTTGTTCCAGGCTGCACAG                         CCTGCACTTCTTTACATCGTACCGGGAGTGATCGGGTTTTTGGGCGTCCAT
genomic: TAGGCCTTCTAGTCACCATTTTGGTGATGAATTTGTTCCAGGCTGCACAGgtatgtccct ... catttcgcagCCTGCACTTCTTTACATCGTACCGGGAGTGATCGGGTTTTTGGGCGTCCAT
EST: gi|208358589|gb|DC946550.1|DC946550
EST:     TAGGCCTTCTAGTCACCATTTTGGTGATGAATTTGTTCCAGGCTGCACAG                         CCTGCACTTCTTTACATCGTACCGGGAGTGATCGGGTTTTTGGGCGTCCAT
genomic: TAGGCCTTCTAGTCACCATTTTGGTGATGAATTTGTTCCAGGCTGCACAGgtatgtccct ... catttcgcagCCTGCACTTCTTTACATCGTACCGGGAGTGATCGGGTTTTTGGGCGTCCAT