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TGCTCAAGCCAAAAACAAAGCTTTGGCTGATGCTGGAGCTATCGTGCCTACTTCTTTTGAGGGTTTGGAAGCTGTAGTCAAAGCTACGTATGACTCAATGgtattcactcagaattaatcacaagttccagttcttcagaacgtcaattttttttgccttttttaatgcaagaagatagttttttgactgactgaatcttttacctag
species | Physcomitrella patens |
transcript | PP1S46_63V6.1 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: CTTCTTTTGAGGGTTTGGAAGCTGTAGTCAAAGCTACGTATGACTCAATG GTTGAGAAGAGCGTCATCATCCCAGTGAAGGATTTCATACCTCCCACTGTCEST: gi|162197631|gb|FC374465.1|FC374465
genomic: CTTCTTTTGAGGGTTTGGAAGCTGTAGTCAAAGCTACGTATGACTCAATGgtattcactc ... ttttacctagGTTGAGAAGAGCGTCATCATCCCAGTGAAGGATTTCATACCTCCCACTGTC
EST: CTTCTTTTGAGGGTTTGGAAGCTGTAGTCAAAGCTACGTATGACTCAATG GTTGAGAAGAGCGTCATCATCCCAGTGAAGGATTTCACACCTCCCACTGTCEST: gi|162150458|gb|FC326106.1|FC326106
genomic: CTTCTTTTGAGGGTTTGGAAGCTGTAGTCAAAGCTACGTATGACTCAATGgtattcactc ... ttttacctagGTTGAGAAGAGCGTCATCATCCCAGTGAAGGATTTCATACCTCCCACTGTC
EST: CTTCTTTTGAGGGTTTGGAAGCTGTAGTCAAAGCTACGTATGACTCAATG GTTGAGAAGAGCGTCATCATCCCAGTGAAGGATTTCACACCTCCCACTGTCEST: gi|162196012|gb|FC372183.1|FC372183
genomic: CTTCTTTTGAGGGTTTGGAAGCTGTAGTCAAAGCTACGTATGACTCAATGgtattcactc ... ttttacctagGTTGAGAAGAGCGTCATCATCCCAGTGAAGGATTTCATACCTCCCACTGTC
EST: CTTCTTTTGAGGGTTTGGAAGCTGTAGTCAAAGCTACGTATGACTCAATG GTTGAGAAGAGCGTCATCATCCCAGTGAAGGATTTCACACCTCCCACTGTCEST: gi|100385297|gb|BY950889.1|BY950889
genomic: CTTCTTTTGAGGGTTTGGAAGCTGTAGTCAAAGCTACGTATGACTCAATGgtattcactc ... ttttacctagGTTGAGAAGAGCGTCATCATCCCAGTGAAGGATTTCATACCTCCCACTGTC
EST: CTTCTTTTGAGGGTTTGGAAGCTGTAGTCAAAGCTACGTATGACTCAATG GTTGAGAAGAGCGTCATCATCCCAGTGAAGGATTTCATACCTCCCACTGTC
genomic: CTTCTTTTGAGGGTTTGGAAGCTGTAGTCAAAGCTACGTATGACTCAATGgtattcactc ... ttttacctagGTTGAGAAGAGCGTCATCATCCCAGTGAAGGATTTCATACCTCCCACTGTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGCTCAAGCCAAAAACAAAGCTTTGGCTGATGCTGGAGCTATCGTGCCTACTTCTTTTGAGGGTTTGGAAGCTGTAGTCAAAGCTACGTATGACTCAATGgtattcactcagaattaatcacaagttccagttcttcagaacgtcaattttttttgccttttttaatgcaagaagatagttttttgactgactgaatcttttacctag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG