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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCGAAAAGCATGGTCTCGAAGTTTCACAGCCGTCGCTGGATTCCTCTCGTGGTACAACTTGGGCAATGACAAGGCATCGGGGCGATATTGAGGTTCACAAgtatgtttctgatatgatttgggtgatatattctacatgctgttctaataatagtactctaacattattaaatgtatagtggggagtcttttaattctgt...

Basic information

species Physcomitrella patens
transcript PP1S448_20V6.3
intron # 9
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162277818|gb|FC454281.1|FC454281
EST:     CAAGGCATCGGGGCGATATTGAGGTTCACAA                         GGTAACGGTGGAACATCCTGGTTGGTGCAAAGATCCGCTCAAGCCCCCCTG
genomic: CAAGGCATCGGGGCGATATTGAGGTTCACAAgtatgtttct ... gcatcttcagGGTAACGGTGGAACATCCTGGTTGGTGCAAAGATCCGCTCAAGCCCCCCTG
EST: gi|162277817|gb|FC454280.1|FC454280
EST:     CAAGGCATCGGGGCGATATTGAGGTTCACAA                         GGTAACGGTGGAACATCCTGGTTGGTGCAAAGATCCGCTCAAGCCCCCCTG
genomic: CAAGGCATCGGGGCGATATTGAGGTTCACAAgtatgtttct ... gcatcttcagGGTAACGGTGGAACATCCTGGTTGGTGCAAAGATCCGCTCAAGCCCCCCTG
EST: gi|162177786|gb|FC354620.1|FC354620
EST:     GGTACAACTTGGGCAATGACAAGGCATCGGGGCGATATTGAGGTTCACAA                         GGTAACGGTGGAACATCCTGGTTGGTGCAAAGATCCGCTCAAGCCCCCCTG
genomic: GGTACAACTTGGGCAATGACAAGGCATCGGGGCGATATTGAGGTTCACAAgtatgtttct ... gcatcttcagGGTAACGGTGGAACATCCTGGTTGGTGCAAAGATCCGCTCAAGCCCCCCTG