Sequence
atgc intronic sequence ATGC exonic sequenceATATGCGTTGCTTTGGGAGACGGAGCATGTCATCGCAGTTAGCTCCGCAATTCAAGATTGGCTTACTTCAAgtgtgccacgctttcccttgttgatatgatgttaaggcaacaatctttgttttgatttgaattagcctgcagatgatcacgcacctgctcaagttatttc...
Basic information
species | Physcomitrella patens |
transcript | PP1S395_50V6.1 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: PP1S395_50V6.1 (Physcomitrella patens), 5'ss of exon 9
lower sequence: GLYMA02G05680.1 (Glycine max), 5'ss of exon 8
ATATGCGTTGCTTTGGGAGACGGAGCATGTCATCGCAGTTAGCTCCGCAATTCAAGATTGGCTTACTTCAAgtgtgccacgctttcccttgttgatatgatgttaaggcaacaatctttgttttgatttgaattagcctgcagatgatcacgcacctgctcaagttatttc------
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GTATGCGCTGCAGTGGGAGTCCGAGAATCTGATTGCTGTGAGCACTGCAATTCAAGATTGGCTTACTTCAAgtaattga---tttaggctat-aactttctgataaagcga-agttattatttta---taagtagtgctgtgaatgat---gttcatattgctgtgacttcaatcag
upper sequence: PP1S395_50V6.1 (Physcomitrella patens), 5'ss of exon 9
lower sequence: GLYMA17G17160.1 (Glycine max), 5'ss of exon 6
ATATGCGTTGCTTTGGGAGACGGAGCATGTCATCGCAGTTAGCTCCGCAATTCAAGATTGGCTTACTTCAAgtg--tgccacgctttcccttgttgatatgatgttaaggcaacaatct-ttgttttgatttgaattagcctgcagatgatcacgcacctgctcaagttatttc
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GTATGCACTGCAGTGGGAGTCTAAGAATCTGATTGCTGTGAGCACTGCAATTCAAGATTGGCTTACTTCAAgtaattggtttaggttttagggtgcttataaaaccaagttattagtttattattagtgctgtgaatgacgttagtattgctgtg-acttgcatcag-------
upper sequence: PP1S395_50V6.1 (Physcomitrella patens), 5'ss of exon 9
lower sequence: GLYMA16G24310.1 (Glycine max), 5'ss of exon 8
ATATGCGTTGCTTTGGGAGACGGAGCATGTCATCGCAGTTAGCTCCGCAATTCAAGATTGGCTTACTTCAAgtg--tgccacgctttcccttgttgatatgatgttaaggcaacaatcttt--gttttgatttgaattagcctgcagatgatcacgcacctgctcaagttatttc
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GTATGCACTGCAGTGGGAGTCCAAGAATCTGATTGCTGTGAGCACTGCAATTCAAGATTGGCTTACTTCAAgtaattggtttaggttttagggtgcttataaaactaagttatcagtttattagtagtgctgtgaatgatgtta-gtattgctgtg-acttgcatcag-------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|208392585|gb|DC938550.1|DC938550EST: GGAGCATGTCATCGCAGTTAGCTCCGCAATTCAAGATTGGCTTACTTCAA CCGCCATGAAGGAGGTCATCAAACGAGGCGCTATGCGCACAATTCTCGGCG
genomic: GGAGCATGTCATCGCAGTTAGCTCCGCAATTCAAGATTGGCTTACTTCAAgtgtgccacg ... actgccacagCCGCCATGAAGGAGGTCATCAAACGAGGCGCTATGCGCACAATTCTCGGCG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ATATGCGTTGCTTTGGGAGACGGAGCATGTCATCGCAGTTAGCTCCGCAATTCAAGATTGGCTTACTTCAAgtgtgccacgctttcccttgttgatatgatgttaaggcaacaatctttgttttgatttgaattagcctgcagatgatcacgcacctgctcaagttatttc
- - - - - - - - - - GGAGCA