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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATATCCGGAAAATGACTATCATGGGACGGACATGCAATATTCGGAAGGCAGATGGCTCCATTGAATGCGTAGTAGATGTGGACAAAAAGATTGCAGAAGgtgatattctagccgtgttttttatatgttttatggttcccatgtatccattggttaggatacactgacaacgtttctttgtttcgtaataacataaacaagccatgtttcttgactcgcatgtgttttcatgtctgcag

Basic information

species Physcomitrella patens
transcript PP1S395_48V6.2
intron # 9
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162266124|gb|FC441873.1|FC441873
EST:     AGATGGCTCCATTGAATGCGTAGTAGATGTGGACAAAAAGATTGCAGAAG                         ATGAGGAAGAGGAAATTGAAATGCTTCTGGAGTACTACCTTCAAAG
genomic: AGATGGCTCCATTGAATGCGTAGTAGATGTGGACAAAAAGATTGCAGAAGgtgatattct ... atgtctgcagATGAGGAAGAGGAAATTGAAATGCTTCTGGAGTACTACCTTCAAAG
EST: gi|67695081|gb|BJ955314.1|BJ955314
EST:     AGATGGCTCCATTGAATGCGTAGTAGATGTGGACAAAAAGATTGCAGAAG                         ATGAGGAAGAGGAAATTGAAATGCTTCTGGAGTACTACCTTCAAAG
genomic: AGATGGCTCCATTGAATGCGTAGTAGATGTGGACAAAAAGATTGCAGAAGgtgatattct ... atgtctgcagATGAGGAAGAGGAAATTGAAATGCTTCTGGAGTACTACCTTCAAAG
EST: gi|37840015|gb|BJ598023.1|BJ598023
EST:     AGATGGCTCCATTGAATGCGTAGTAGATGTGGACAAAAGGATTGCAGAAG                         ATGAGGAAGAGGAAATTGAAATGCTTCTGGAGTNCTACCTTCAAAG
genomic: AGATGGCTCCATTGAATGCGTAGTAGATGTGGACAAAAAGATTGCAGAAGgtgatattct ... atgtctgcagATGAGGAAGAGGAAATTGAAATGCTTCTGGAGTACTACCTTCAAAG
EST: gi|37844029|gb|BJ602037.1|BJ602037
EST:     AGATGGCTCCATTGAATGCGTAGTAGATGTGGACAAAAAGATTGCAGAAG                         ATGAGGAAGAGGAAATTGAAATGCTTCTGGAGTACTACCTTCAAAG
genomic: AGATGGCTCCATTGAATGCGTAGTAGATGTGGACAAAAAGATTGCAGAAGgtgatattct ... atgtctgcagATGAGGAAGAGGAAATTGAAATGCTTCTGGAGTACTACCTTCAAAG
EST: gi|162260621|gb|FC436625.1|FC436625
EST:     AGATGGCTCCATTGAATGCGTAGTAGATGTGGACAAAAAGATTGCAGAAG                         ATGAGGAAGAGGAAATTGAAATGCTTCTGGAGTACTACCTTCAAAG
genomic: AGATGGCTCCATTGAATGCGTAGTAGATGTGGACAAAAAGATTGCAGAAGgtgatattct ... atgtctgcagATGAGGAAGAGGAAATTGAAATGCTTCTGGAGTACTACCTTCAAAG
EST: gi|162280061|gb|FC456455.1|FC456455
EST:     AGATGGCTCCATTGAATGCGTAGTAGATGTGGACAAAAAGATTGCAGAAG                         ATGAGGAAGAGGAAATTGAAATGCTTCTGGAGTACTACCTTCAAAG
genomic: AGATGGCTCCATTGAATGCGTAGTAGATGTGGACAAAAAGATTGCAGAAGgtgatattct ... atgtctgcagATGAGGAAGAGGAAATTGAAATGCTTCTGGAGTACTACCTTCAAAG
EST: gi|18336282|gb|BJ168304.1|BJ168304
EST:     AGATGGCTCCATTGAATGCGTAGTAGATGTGGACAAAAAGATTGCAGAAG                         ATGAGGAAGAGGAAATTGAAATGCTTCTGGAGTACTACCTTCAAAG
genomic: AGATGGCTCCATTGAATGCGTAGTAGATGTGGACAAAAAGATTGCAGAAGgtgatattct ... atgtctgcagATGAGGAAGAGGAAATTGAAATGCTTCTGGAGTACTACCTTCAAAG
EST: gi|162266125|gb|FC441874.1|FC441874
EST:     AGATGGCTCCATTGAATGCGTAGTAGATGTGGACAAAAAGATTGCAGAAG                         ATGAGGAAAAGGAAATTGAAATGCTTCTGGAGTACTACCTTCAAAG
genomic: AGATGGCTCCATTGAATGCGTAGTAGATGTGGACAAAAAGATTGCAGAAGgtgatattct ... atgtctgcagATGAGGAAGAGGAAATTGAAATGCTTCTGGAGTACTACCTTCAAAG
EST: gi|37840487|gb|BJ598495.1|BJ598495
EST:     ATGGCTCCCATTGAATGCGTAGTAGATGTGGACAAAAAGGATTGCAGAAG                         ATGAGGAAGAGGAAATTGAAATGCTTCTGGAGTACTACCTTCAAAG
genomic: ATGGCT-CCATTGAATGCGTAGTAGATGTGGACAAAAA-GATTGCAGAAGgtgatattct ... atgtctgcagATGAGGAAGAGGAAATTGAAATGCTTCTGGAGTACTACCTTCAAAG
EST: gi|162280060|gb|FC456454.1|FC456454
EST:     AGATGGCTCCATTGAATGCGTAGTAGATGTGGACAAAAAGATTGCAGAAG                         ATGAGGAAGAGGAAATTGAAATGCTTCTGGAGTACTACCTTCAAAG
genomic: AGATGGCTCCATTGAATGCGTAGTAGATGTGGACAAAAAGATTGCAGAAGgtgatattct ... atgtctgcagATGAGGAAGAGGAAATTGAAATGCTTCTGGAGTACTACCTTCAAAG