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GTAATAATCAACCTGGACAGATGGTAGTTGGACAGACATTCACTATTGgtatgtttcttctcaatcggtattacattatttttattaataggtgtggtctcccaattagtttatttctaaaaagcaaatcaaagtgaaaaagatactg...
species | Physcomitrella patens |
transcript | PP1S392_8V6.2 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: GTAATAATCAACCTGGACAGATGGTAGTTGGACAGACATTCACTATTG AGCCTATGCTGACAGAAGGGAGCATAAGGGACGTGATGTGGAACGACAACTEST: gi|37832662|gb|BJ590674.1|BJ590674
genomic: GTAATAATCAACCTGGACAGATGGTAGTTGGACAGACATTCACTATTGgtatgtttct ... tcctgtgcagAGCCTATGCTGACAGAAGGGAGCATAAGGGACGTGATGTGGAACGACAACT
EST: GTAATAATCAACCTGGACAGATGGTAGTTGGACAGACATTCACTATTG AGCCTATGCTGACAGAAGGGAGCATAAGGGACGTGATGTGGAACGACAACTEST: gi|208359529|gb|DC954082.1|DC954082
genomic: GTAATAATCAACCTGGACAGATGGTAGTTGGACAGACATTCACTATTGgtatgtttct ... tcctgtgcagAGCCTATGCTGACAGAAGGGAGCATAAGGGACGTGATGTGGAACGACAACT
EST: GTAATAATCAACCTGGACAGATGGTAGTTGGACAGACATTCACTATTG AGCCTATGCTGACAGAAGGGAGCATAAGGGACGTGATGTGGAACGACAACTEST: gi|37832597|gb|BJ590609.1|BJ590609
genomic: GTAATAATCAACCTGGACAGATGGTAGTTGGACAGACATTCACTATTGgtatgtttct ... tcctgtgcagAGCCTATGCTGACAGAAGGGAGCATAAGGGACGTGATGTGGAACGACAACT
EST: GTAATAATCAACCTGGACAGATGGTAGTTGGACAGACATTCACTATTG AGCCTATGCTGACAGAAGGGAGCATAAGGGACGTGATGTGGAACGGCAACTEST: gi|162238238|gb|FC418744.1|FC418744
genomic: GTAATAATCAACCTGGACAGATGGTAGTTGGACAGACATTCACTATTGgtatgtttct ... tcctgtgcagAGCCTATGCTGACAGAAGGGAGCATAAGGGACGTGATGTGGAACGACAACT
EST: GTAATAATCAACCTGGACAGATGGTAGTTGGACAGACATTCACTATTG AGCCTATGCTGACAGAAGGGAGCATAAGGGACGTGATGTGGAACGACAACT
genomic: GTAATAATCAACCTGGACAGATGGTAGTTGGACAGACATTCACTATTGgtatgtttct ... tcctgtgcagAGCCTATGCTGACAGAAGGGAGCATAAGGGACGTGATGTGGAACGACAACT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTAATAATCAACCTGGACAGATGGTAGTTGGACAGACATTCACTATTGgtatgtttcttctcaatcggtattacattatttttattaataggtgtggtctcccaattagtttatttctaaaaagcaaatcaaagtgaaaaagatactg
- - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaagcaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaagata