1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
ACTCTTTGCCTTAGCAGAAGGTTATGGTATTCAGGATTGGCTTCATTTTGATGCCTCAGTGGTGAGAGGCTTAGCGTACTACACCGGGACCGTATTTGAGgtgaggttcctctgacataatttgccggtcatctcttttacacctttttggtcatcctctggaagtggctaaagattttgaaggcaactataacttccac...
species | Physcomitrella patens |
transcript | PP1S38_401V6.1 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: ATGCCTCAGTGGTGAGAGGCTTAGCGTACTACACCGGGACCGTATTTGAG GGTTTTGACAAGGACAAAAAGTTGAGAGCTATATGTGGAGGCGGTCGTTATEST: gi|162152312|gb|FC328499.1|FC328499
genomic: ATGCCTCAGTGGTGAGAGGCTTAGCGTACTACACCGGGACCGTATTTGAGgtgaggttcc ... tgtgttgcagGGTTTTGACAAGGACAAAAAGTTGAGAGCTATATGTGGAGGCGGTCGTTAT
EST: ATGCCTCAGTGGTGAGAGGCTTAGCGTACTACACCGGGACCGTATTTGAG GGTTTTGACAAGGACAAAAAGTTGAGAGCTATATGTGGAGGCGGTCGTTATEST: gi|162229134|gb|FC404493.1|FC404493
genomic: ATGCCTCAGTGGTGAGAGGCTTAGCGTACTACACCGGGACCGTATTTGAGgtgaggttcc ... tgtgttgcagGGTTTTGACAAGGACAAAAAGTTGAGAGCTATATGTGGAGGCGGTCGTTAT
EST: ATGCCTCAGTGGTGAGAGGCTTAGCGTACTACACCGGGACCGTATTTGAG GGTTTTGACAAGGACAAAAAGTTGAGAGCTATATGTGGAGGCGGTCGTTATEST: gi|162181949|gb|FC357756.1|FC357756
genomic: ATGCCTCAGTGGTGAGAGGCTTAGCGTACTACACCGGGACCGTATTTGAGgtgaggttcc ... tgtgttgcagGGTTTTGACAAGGACAAAAAGTTGAGAGCTATATGTGGAGGCGGTCGTTAT
EST: ATGCCTCAGTGGTGAGAGGCTTAGCGTACTACACCGGGACCGTATTTGAG GGTTTTGACAAGGACAAAAAGTTGAGAGCTATATGTGGAGGCGGTCGTTATEST: gi|162250564|gb|FC428467.1|FC428467
genomic: ATGCCTCAGTGGTGAGAGGCTTAGCGTACTACACCGGGACCGTATTTGAGgtgaggttcc ... tgtgttgcagGGTTTTGACAAGGACAAAAAGTTGAGAGCTATATGTGGAGGCGGTCGTTAT
EST: ATGCCTCAGTGGTGAGAGGCTTAGCGTACTACACCGGGACCGTATTTGAG GGTTTTGACAAGGACAAAAAGTTGAGAGCTATATGTGGAGGCGGTCGTTATEST: gi|162226288|gb|FC402996.1|FC402996
genomic: ATGCCTCAGTGGTGAGAGGCTTAGCGTACTACACCGGGACCGTATTTGAGgtgaggttcc ... tgtgttgcagGGTTTTGACAAGGACAAAAAGTTGAGAGCTATATGTGGAGGCGGTCGTTAT
EST: ATGCCTCAGTGGTGAGAGGCTTAGCGTACTACACCGGGACCGTATTTGAG GGTTTTGACAAGGACAAAAAGTTGAGAGCTATATGTGGAGGCGGTCGTTATEST: gi|162188468|gb|FC365066.1|FC365066
genomic: ATGCCTCAGTGGTGAGAGGCTTAGCGTACTACACCGGGACCGTATTTGAGgtgaggttcc ... tgtgttgcagGGTTTTGACAAGGACAAAAAGTTGAGAGCTATATGTGGAGGCGGTCGTTAT
EST: ATGCCTCAGTGGTGAGAGGCTTAGCGTACTACACCGGGACCGTATTTGAG GGTTTTGACAAGGACAAAAAGTTGAGAGCTATATGTGGAGGCGGTCGTTATEST: gi|162258146|gb|FC433928.1|FC433928
genomic: ATGCCTCAGTGGTGAGAGGCTTAGCGTACTACACCGGGACCGTATTTGAGgtgaggttcc ... tgtgttgcagGGTTTTGACAAGGACAAAAAGTTGAGAGCTATATGTGGAGGCGGTCGTTAT
EST: ATGCCTCAGTGGTGAGAGGCTTAGCGTACTACACCGGGACCGTATTTGAG GGTTTTGACAAGGACAAAAAGTTGAGAGCTATATGTGGAGGCGGTCGTTAT
genomic: ATGCCTCAGTGGTGAGAGGCTTAGCGTACTACACCGGGACCGTATTTGAGgtgaggttcc ... tgtgttgcagGGTTTTGACAAGGACAAAAAGTTGAGAGCTATATGTGGAGGCGGTCGTTAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACTCTTTGCCTTAGCAGAAGGTTATGGTATTCAGGATTGGCTTCATTTTGATGCCTCAGTGGTGAGAGGCTTAGCGTACTACACCGGGACCGTATTTGAGgtgaggttcctctgacataatttgccggtcatctcttttacacctttttggtcatcctctggaagtggctaaagattttgaaggcaactataacttccac
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