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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAACAAGGATGACTTCTTCGATTCTCTATCCTGTGATGCAACTCACGGAGGACGTGGTGAACGCCCTAAATTCTCTGAGCAACGCAGGATTGACACAGAGgtatgtcattccacttgataagcatgctttactagctctggcgggaacgagctcggaatgctacaggcaaattcacttctatgcgaccagaagagtctaa...

Basic information

species Physcomitrella patens
transcript PP1S35_182V6.2
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S35_182V6.2 (Physcomitrella patens), 5'ss of exon 9
lower sequence: EFJ22693 (Selaginella moellendorffii), 5'ss of exon 7
CAACAAGGATGACTTCTTCGATTCTCTATCCTGTGATGC---AACTCACGGAGGACGTGGTGAACGCCCTAAATTCTCTGAGCAACGCAGGATTGACACAGAGgtatgtcattccacttgataagcatgctttactagctctggcgggaacgagctcggaatgctacaggcaaattcacttctatgcgaccagaagagtctaa
   |||||||||||| ||||||||||| ||||||||  |      ||  |  ||  ||   || ||||| |  || || |||||||| | |||  |||| |||||     | || | |      || || |||    | |||  |  |      ||  || || ||                                     
---CAAGGATGACTTTTTCGATTCTCTCTCCTGTGACACTCTGGATCGTGAGGGTGGTACCGAGCGCCCCAGGTTTTCAGAGCAACGTAAGATCAACACTGAGgt----tagtcgagtgtcagtgcttggtttg--ggttctcactcggtt--tctttgattgatag------------------------------------

upper sequence: PP1S35_182V6.2 (Physcomitrella patens), 5'ss of exon 9
lower sequence: EFJ13073 (Selaginella moellendorffii), 5'ss of exon 7
CAACAAGGATGACTTCTTCGATTCTCTATCCTGTGATGC---AACTCACGGAGGACGTGGTGAACGCCCTAAATTCTCTGAGCAACGCAGGATTGACACAGAGgtatgtcattccacttgataagcatgctttactagctctggcgggaacgagctcggaatgctacaggcaaattcacttctatgcgaccagaagagtctaa
   |||||||||||| ||||||||||| ||||||||  |      ||  |  ||  ||   || ||||| | ||| || |||||||| | |||  |||| |||||     | || | |      || || |||    | |||  |  |      ||  || || ||                                     
---CAAGGATGACTTTTTCGATTCTCTCTCCTGTGACACTCTGGATCGTGAGGGTGGTACCGAGCGCCCCAGATTTTCAGAGCAACGTAAGATCAACACTGAGgt----tagtcgagtgtcagtgcttggtttg--ggttctcactcggtt--tctttgattgatag------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162161376|gb|FC337595.1|FC337595
EST:     GACGTGGTGAACGCCCTANATTCTCTGAGCAACGCAGGATTGACACAGAG                         ACGTTTGGGGCTTTTCCTGTGAGGTCCTCT
genomic: GACGTGGTGAACGCCCTAAATTCTCTGAGCAACGCAGGATTGACACAGAGgtatgtcatt ... ttgccttcagACGTTTGGGGCTTTTCCTGTGAGGTCCTCT
EST: gi|162154240|gb|FC330371.1|FC330371
EST:     GACGTGGTGAACGCCCTAAATTCTCTGAGCAACGCANGATTGACACAGAG                         ACGTTTGGGGCTTTTCCTGTGAGGTCCTCTGGAGGA
genomic: GACGTGGTGAACGCCCTAAATTCTCTGAGCAACGCAGGATTGACACAGAGgtatgtcatt ... ttgccttcagACGTTTGGGGCTTTTCCTGTGAGGTCCTCTGGAGGA