1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
GAATGTACCCATTGCGTTTATAAGCGTTATCATATTGCCGATTGTTGGAAACGCCGCAGAGCATGCGAGTGCTATAATGTTTGCCCTCAAAGATAAGCTGgtaagtcctctcgtgatggtctaagcctagaaatgttactagacaacaacgtgatattcatgagagcttgacatttccaagccctagtcaataattcattccttcgctggtcgtcaatcatcgactttgttgtgtaaactcattggcttcgatttttgtcttcgtcttgttcacatttttctttctggcag
species | Physcomitrella patens |
transcript | PP1S336_18V6.2 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: ACGCCGCAGAGCATGCGAGTGCTATAATGTTTGCCCTCAAAGATAAGCTG GATATCTCGCTTGGGGTGGCTATCGGTTCTTCCACTCAGATCTCTATGTTTEST: gi|37835126|gb|BJ593138.1|BJ593138
genomic: ACGCCGCAGAGCATGCGAGTGCTATAATGTTTGCCCTCAAAGATAAGCTGgtaagtcctc ... tttctggcagGATATCTCGCTTGGGGTGGCTATCGGTTCTTCCACTCAGATCTCTATGTTT
EST: ACGCCGCAGAGCATGCGAGTGCTATAATGTTTGCCCTCAAAGATAAGCTG GATATCTCGCTTGGGGTGGCTATCGGTTCTTCCACTCAGATCTCTATGTTTEST: gi|37843582|gb|BJ601590.1|BJ601590
genomic: ACGCCGCAGAGCATGCGAGTGCTATAATGTTTGCCCTCAAAGATAAGCTGgtaagtcctc ... tttctggcagGATATCTCGCTTGGGGTGGCTATCGGTTCTTCCACTCAGATCTCTATGTTT
EST: ACGCCGCAGAGCATGCGAGTGCTATAATGTTTGCCCTCAAAGATAAGCTG GATATCTCGCTTGGGGTGGCTATCGGTTCTTCCACTCAGATCTCTATGTTTEST: gi|162155093|gb|FC330887.1|FC330887
genomic: ACGCCGCAGAGCATGCGAGTGCTATAATGTTTGCCCTCAAAGATAAGCTGgtaagtcctc ... tttctggcagGATATCTCGCTTGGGGTGGCTATCGGTTCTTCCACTCAGATCTCTATGTTT
EST: ACGCCGCAGAGCATGCGAGTGCTATAATGTTTGCCCTCAAAGATAAGCTG GATATCTCGCTTGGGGTGGCTATCGGTTCTTCCACTCAGATCTCTATGTTTEST: gi|162267366|gb|FC443909.1|FC443909
genomic: ACGCCGCAGAGCATGCGAGTGCTATAATGTTTGCCCTCAAAGATAAGCTGgtaagtcctc ... tttctggcagGATATCTCGCTTGGGGTGGCTATCGGTTCTTCCACTCAGATCTCTATGTTT
EST: ACGCCGCAGAGCATGCGAGTGCTATAATGTTTGCCCTCAAAGATAAGCTG GATATCTCGCTTGGGGTGGCTATCGGTTCTTCCACTCAGATCTCTATGTTTEST: gi|37829099|gb|BJ587111.1|BJ587111
genomic: ACGCCGCAGAGCATGCGAGTGCTATAATGTTTGCCCTCAAAGATAAGCTGgtaagtcctc ... tttctggcagGATATCTCGCTTGGGGTGGCTATCGGTTCTTCCACTCAGATCTCTATGTTT
EST: ACGCCGCAGAGCATGCGAGTGCTATAATGTTTGCCCTCAAAGATAAGCTG GATATCTCGCTTGGGGTGGCTATCGGTTCTTCCACTCAGATCTCTATGTTT
genomic: ACGCCGCAGAGCATGCGAGTGCTATAATGTTTGCCCTCAAAGATAAGCTGgtaagtcctc ... tttctggcagGATATCTCGCTTGGGGTGGCTATCGGTTCTTCCACTCAGATCTCTATGTTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAATGTACCCATTGCGTTTATAAGCGTTATCATATTGCCGATTGTTGGAAACGCCGCAGAGCATGCGAGTGCTATAATGTTTGCCCTCAAAGATAAGCTGgtaagtcctctcgtgatggtctaagcctagaaatgttactagacaacaacgtgatattcatgagagcttgacatttccaagccctagtcaataattcattccttcgctggtcgtcaatcatcgactttgttgtgtaaactcattggcttcgatttttgtcttcgtcttgttcacatttttctttctggcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG