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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGCTGAACGTGTGTTATTTTTAATGCCTTGTCATGCAACCCCTTATTATTCTTCCCTGCACAAGGATATTCCAATGCGTTTCCTGGACTGTTCCCCTAGgtacgcgattgcctccctgatcttatcagttgtttagcagtcgtgatcttttctcattacattgattgtttccctctgccaaggtgctgggacactagcc...

Basic information

species Physcomitrella patens
transcript PP1S32_143V6.1
intron # 9
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37828377|gb|BJ586389.1|BJ586389
EST:     TCTTCCCTGCACAAGGATATTCCAATGCGTTTCCTGGACTGTTCCCCTAG                         TGATAAGCCCGGTTATGTGGACGAGGCAGATCAATTCAAGGCTCATCCTCT
genomic: TCTTCCCTGCACAAGGATATTCCAATGCGTTTCCTGGACTGTTCCCCTAGgtacgcgatt ... ttttgtgcagTGATAAGCCCGGTTATGTGGACGAGGCAGATCAATTCAAGGCTCATCCTCT
EST: gi|37835410|gb|BJ593422.1|BJ593422
EST:     TCTTCCCTGCACAAGGATATTCCAATGCGTTTCCTGGACTGTTCCCCTAG                         TGATAAGCCCGGTTATGTGGACGAGGCAGATCAATTCAAGGCTCATCCTCT
genomic: TCTTCCCTGCACAAGGATATTCCAATGCGTTTCCTGGACTGTTCCCCTAGgtacgcgatt ... ttttgtgcagTGATAAGCCCGGTTATGTGGACGAGGCAGATCAATTCAAGGCTCATCCTCT
EST: gi|208355107|gb|DC922209.1|DC922209
EST:     TCTTCCCTGCACAAGGATATTCCAATGCGTTTCCTGGACTGTTCCCCTAG                         TGATAAGCCCGGTTATGTGGACGAGGCAGATCAATTCAAGGCTCATCCTCT
genomic: TCTTCCCTGCACAAGGATATTCCAATGCGTTTCCTGGACTGTTCCCCTAGgtacgcgatt ... ttttgtgcagTGATAAGCCCGGTTATGTGGACGAGGCAGATCAATTCAAGGCTCATCCTCT