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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTGTGGAAGAAGCACAACGAGCAATCAATGCAGCTCATGTGGAAGCAGAAAGTACTCATAATGGTGTTGGGGTGGTCAAACTCATGGGTCGTTACAGTGgtaatgttctgacattactcgaatcgaaccattctgttgcagacttttctacaacatttgacaatgatagaactttacatgatgattgagttttccatgtttgggaatcaaattatttattgatgcggttcatgtgtgcag

Basic information

species Physcomitrella patens
transcript PP1S327_30V6.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S327_30V6.1 (Physcomitrella patens), 5'ss of exon 9
lower sequence: GLYMA08G21370.1 (Glycine max), 5'ss of exon 8
GCTGTGGAAGAAGCACAACGAGCAATCAATGCAGCTCATGTGGAAGCAGAAAGTACTCATAATGGTGTTGGGGTGGTCAAACTCATGGGTCGTTACAGTGgtaatgttctgacattactcgaatcgaaccattctgttgcagacttttctacaacatttgacaatgatagaactttac-atgatgattgagttttccatgtttgggaatcaaattatttattgatgcggttcatgtgtgcag
||||| ||||| ||||||||||| || ||||| |||||||||||||||||||| ||| | |||||| | ||  | |||||||| ||||||||| ||||||||||   ||    ||   ||| |    || || |      |  ||| |       || |   | |   ||| ||  |  ||||    | || |       |                                         
GCTGTTGAAGAGGCACAACGAGCCATAAATGCTGCTCATGTGGAAGCAGAAAGCACTGAGAATGGTATCGGTATTGTCAAACTAATGGGTCGTCACAGTGgtaagtatcatttatatttcgtaatttacaatacaagcttaaccttatgctagctatatag-agtagaagatctgaaagatgacttgtaagctgctgtcat-----------------------------------------

upper sequence: PP1S327_30V6.1 (Physcomitrella patens), 5'ss of exon 9
lower sequence: GLYMA07G01710.1 (Glycine max), 5'ss of exon 8
GCTGTGGAAGAAGCACAACGAGCAATCAATGCAGCTCATGTGGAAGCAGAAAGTACTCATAATGGTGTTGGGGTGGTCAAACTCATGGGTCGTTACAGTGgtaatgttctgacattactcgaatcgaaccattctgttgcagacttttctacaacatttgacaatgatagaactttac-atgatgattgagttttccatgtttgggaatcaaattatttattgatgcggttcatgtgtgcag
||||| ||||| ||||||||||| || ||||| |||||||||||||||||||| ||| | |||||| |||| || |||||  | ||||||||| ||||||||||   ||    ||   ||| |    || || |      || ||  |  |    || |   | |   ||| ||  |  ||||    | || |  |  || |                                        
GCTGTTGAAGAGGCACAACGAGCCATAAATGCTGCTCATGTGGAAGCAGAAAGCACTGAGAATGGTATTGGTGTTGTCAAGTTAATGGGTCGTCACAGTGgtaagtatcatttatatttcgtaatttacaatacaagcttagcctgatggaagttatatag-agtagaagatctgaaagatgacctgtaagctg-ctgtgat----------------------------------------

upper sequence: PP1S327_30V6.1 (Physcomitrella patens), 5'ss of exon 9
lower sequence: GLYMA13G42990.1 (Glycine max), 5'ss of exon 9
GCTGTGGAAGAAGCACAACGAGCAATCAATGCAGCTCATGTGGAAGCAGAAAGTACTCATAATGGTGTTGGGGTGGTCAAACTCATGGGTCGTTACAGTGgtaatgttctgacattactcgaatcgaaccattctgttgcagacttttctacaacatttgacaatgatagaactttacatgatgattgagttttccatgtttgggaatcaaattatttattgatgcggttcatgtgtgcag
||||| ||||| |||||||||||||||||| | ||||||||||||||||||||  || | |||||  |||| || || ||| | ||||| ||||||||||||||  |||   |||| |||  ||   |   |||   |  ||    ||| | | ||| ||   |     || ||||      | | | | |||| | |   ||  |      |                            
GCTGTTGAAGAGGCACAACGAGCAATCAATTCTGCTCATGTGGAAGCAGAAAGCGCTGAGAATGGAATTGGTGTTGTAAAATTAATGGGGCGTTACAGTGgtaagcttcattcattcctctgat---aattttcaacttaag----ttccata-catatgttgaatgctgacctttg-----tcacttactttttctttcatgacatcttcct----------------------------

upper sequence: PP1S327_30V6.1 (Physcomitrella patens), 5'ss of exon 9
lower sequence: GLYMA15G02400.1 (Glycine max), 5'ss of exon 9
GCTGTGGAAGAAGCACAACGAGCAATCAATGCAGCTCATGTGGAAGCAGAAAGTACTCATAATGGTGTTGGGGTGGTCAAACTCATGGGTCGTTACAGTGgtaatgttctgacattactcgaatcgaaccattctgttgcagacttttctacaacatttgacaatgatagaactttacatgatgattgagttttccatgtttgggaatcaaattatttattgatgcggttcatgtgtgcag
||||| ||||| |||||||||||||||||| | ||||||||||||||||||||  |  | |||||  |||| || || ||| | ||||| ||||||||||||||  |||   |||| |||  ||   |   | |   |  ||| ||   |||    |||  |  | ||   |  || |    |    |||||| ||||    ||  | |                                
GCTGTTGAAGAGGCACAACGAGCAATCAATTCTGCTCATGTGGAAGCAGAAAGCGCGGAGAATGGAATTGGTGTTGTAAAATTAATGGGGCGTTACAGTGgtaagcttcattcattcctctgat---aatttacaactttagagttccatac----tttttctttcatgacatcttcctcctta---gagtttcccata---ggagacctgtc----------------------------