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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATGCAGGCATTGGTACCAGCATTGATTCGTTCTATGAGTACCTACTCAAGgtcagtttccccttgttgtcatgttcccgtatttgtgtttatgttatgataactacgtttgccaatccattgaagttcgccaaagtgttcaatttggatc...

Basic information

species Physcomitrella patens
transcript PP1S313_34V6.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S313_34V6.1 (Physcomitrella patens), 5'ss of exon 9
lower sequence: AT5G43710.1 (Arabidopsis thaliana), 5'ss of exon 9
GATGCAGGCATTGGTACCAGCATTGATTCGTTCTATGAGTACCTACTCAAGgtcagtttcccc--ttgttgtcatgttcccgtatttgtgtttatgttatgataactacgtttgccaatccattgaa-----gttcgccaaagtgttcaa-tttggatc-------------------------------------------------------------------
||||| || || || || ||||||||||| ||||||||||| ||||||||||| |||   |       ||| || | |     | || | |  || | |||   |  |    |   ||||||   ||     |||        | ||||| |||| ||                                                                    
GATGCTGGTATAGGAACAAGCATTGATTCCTTCTATGAGTATCTACTCAAGgttagtaaacgtagcccttgacaagatatttgaattatttggatataatggcca--agtcctagaaatccagaaaaaaatagtttctgttcttcttcaactttgcataaaacttgagcggcattgatatagtcctagactcctcgctttacttttgtttgatttgacaatttcag