1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
CTTGGCGCGAGTTGAGCAGATAACTGATGACGCCCAACGGTTCTTCAATAACACTCGGATCAGAGTTGTTCACTACGAAGATCTTGTGGTGGATCCTAAGgttggtcgtctcccattgttcttaatccagatttcatctgaatttcgaggtcattcagtgaaatagatgcttggtgtttgaaaatctgtgatttgcatacataaaatttcgctcttagttttagtttccacaacttacgattttaagcccgttcaaatatgcag
species | Physcomitrella patens |
transcript | PP1S310_50V6.1 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: ACACTCGGATCAGAGTTGTTCACTACGAAGATCTTGTGGTGGATCCTAAG TATCTGTCCGAAATCCAACATTTTTTGGGGGTGCAACCCCGGAAGCTAGAAEST: gi|67698430|gb|BJ958663.1|BJ958663
genomic: ACACTCGGATCAGAGTTGTTCACTACGAAGATCTTGTGGTGGATCCTAAGgttggtcgtc ... aaatatgcagTATCTGTCCGAAATCCAACATTTTTTGGGGGTGCAACCCCGGAAGCTAGAA
EST: ACACTCGGATCAGAGTTGTTCACTACGAAGATCTTGTGGTGGATCCTAAG TATCTGTCCGAAATCCAACATTTTTTGGGGGTGCAACCCCGGAAGCTAGAAEST: gi|162183020|gb|FC360586.1|FC360586
genomic: ACACTCGGATCAGAGTTGTTCACTACGAAGATCTTGTGGTGGATCCTAAGgttggtcgtc ... aaatatgcagTATCTGTCCGAAATCCAACATTTTTTGGGGGTGCAACCCCGGAAGCTAGAA
EST: ACACTCGGATCAGAGTTGTTCACTACGAAGATCTTGTGGTGGATCCTAAG TATCTGTCCGAAATCCAACATTTTTTGGGGGTGCAACCCCGGAAGCTAGAAEST: gi|162256009|gb|FC431773.1|FC431773
genomic: ACACTCGGATCAGAGTTGTTCACTACGAAGATCTTGTGGTGGATCCTAAGgttggtcgtc ... aaatatgcagTATCTGTCCGAAATCCAACATTTTTTGGGGGTGCAACCCCGGAAGCTAGAA
EST: ACACTCGGATCAGAGTTGTTCACTACGAAGATCTTGTGGTGGATCCTAAG TATCTGTCCGAAATCCAACATTTTTTGGGGGTGCAACCCCGGAAGCTAGAAEST: gi|162183021|gb|FC360587.1|FC360587
genomic: ACACTCGGATCAGAGTTGTTCACTACGAAGATCTTGTGGTGGATCCTAAGgttggtcgtc ... aaatatgcagTATCTGTCCGAAATCCAACATTTTTTGGGGGTGCAACCCCGGAAGCTAGAA
EST: ACACTCGGATCAGAGTTGTTCACTACGAAGATCTTGTGGTGGATCCTAAG TATCTGTCCGAAATCCAACATTTTTTGGGGGTGCAACCCCGGAAGCTAGAA
genomic: ACACTCGGATCAGAGTTGTTCACTACGAAGATCTTGTGGTGGATCCTAAGgttggtcgtc ... aaatatgcagTATCTGTCCGAAATCCAACATTTTTTGGGGGTGCAACCCCGGAAGCTAGAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTTGGCGCGAGTTGAGCAGATAACTGATGACGCCCAACGGTTCTTCAATAACACTCGGATCAGAGTTGTTCACTACGAAGATCTTGTGGTGGATCCTAAGgttggtcgtctcccattgttcttaatccagatttcatctgaatttcgaggtcattcagtgaaatagatgcttggtgtttgaaaatctgtgatttgcatacataaaatttcgctcttagttttagtttccacaacttacgattttaagcccgttcaaatatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA