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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTATGGCTTTCCGTGTCCCGACTCCCAATGTGTCTGTGGTGGATCTGACTGTGCGTCTCCAAAAGAGCGGCTCATACGAGGACATCAAGGCAGCCATCAAgtgagggatcgtctgggggtgctgctttgtggcagctgttttcaagtgtagtgatgcttacctgttgttcaagtttgaggtgcccagtaacaagtcgctgccactgacgttgggaggtatggttttgtgcgaatgattgcag

Basic information

species Physcomitrella patens
transcript PP1S309_84V6.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S309_84V6.1 (Physcomitrella patens), 5'ss of exon 9
lower sequence: GLYMA03G22790.1 (Glycine max), 5'ss of exon 11
GTATGGCTTTCCGTGTCCCGACTCCCAATGTGTCTGTGGTGGATCTGACTGTGCGTCTCCAAAAGAGCGGCTCATACGAGGACATCAAGGCAGCCATCAAgtgagggatcgtctgggggtgctgctttgtggcagctgttttcaagtgtagtgatgcttacctgttgttcaagtttgaggtgcccagtaacaagtcgctgccactgacgttgggaggtatggttttgtgcgaatgattgcag
| ||||| |||||||| |||||||||||||| |||||||||||  |||||   || ||  | ||||  |  || || || ||  | || ||||| || ||||  |      | | | | |  |  ||| |||   |   | |     |  |||||  ||   |  |   |   |||    ||     ||  |  | ||| |     |   ||                              
GGATGGCATTCCGTGTACCGACTCCCAATGTTTCTGTGGTGGACTTGACTTGCCGGCTTAAGAAGAATGCTTCCTATGAAGATGTTAAAGCAGCAATAAAgtatg----tctattgcgttttttttttttggtctccactct-----gctgtgattgttctgtactaacc---ttttgcttgatttctatgactttgctactgaaaaatatgaag---------------------------

upper sequence: PP1S309_84V6.1 (Physcomitrella patens), 5'ss of exon 9
lower sequence: GLYMA16G09020.1 (Glycine max), 5'ss of exon 11
GTATGGCTTTCCGTGTCCCGACTCCCAATGTGTCTGTGGTGGATCTGACTGTGCGTCTCCAAAAGAGCGGCTCATACGAGGACATCAAGGCAGCCATCAAgtgagggatcgtctgggggtgctgctttgtggcagctgttttcaagtgtagtgatgcttacctgttgttcaagtttgaggtgcccagtaacaagtcgctgccactgacgttgggaggtatggttttgtgcgaatgattgcag
| ||||| |||||||| |||||||||||||| |||||||||||  |||||   || ||  | ||||  |  || || || ||  | || ||||| || ||||        ||||        |||||| ||     |   | ||     | || ||  |   |||| |  ||  ||    |||    |  | |     || |  ||    ||  |  ||||                     
GGATGGCATTCCGTGTTCCGACTCCCAATGTTTCTGTGGTGGACTTGACTTGCCGGCTTAAGAAGAATGCATCCTATGAAGATGTTAAAGCAGCAATAAAgta------tgtcta------ttgctttttgtttttttgctccaccctcattgctg--tgattgttctgtaaccttt---tgcttgatttcta-----tgactttgctactgaaaaatatgaag------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37851432|gb|BJ609440.1|BJ609440
EST:     GTGCGTCTCCAAAAGAGCGGCTCATACGAGGACATCAAGGCAGCCATCAA                         GGCCGCTTCTGAGGGGCCGATGTACGGCATCTTGGGTTACACTGAGGACGA
genomic: GTGCGTCTCCAAAAGAGCGGCTCATACGAGGACATCAAGGCAGCCATCAAgtgagggatc ... atgattgcagGGCCGCTTCTGAGGGGCCGATGTACGGCATCTTGGGTTACACTGAGGACGA
EST: gi|37848291|gb|BJ606299.1|BJ606299
EST:     GTGCGTCTCCAAAAGAGCGGCTCATACGAGGACATCAAGGCAGCCATCAA                         GGCCGCTTCTGAGGGGCCGATGTACGGCATCTTGGGTTACACTGAGGACGA
genomic: GTGCGTCTCCAAAAGAGCGGCTCATACGAGGACATCAAGGCAGCCATCAAgtgagggatc ... atgattgcagGGCCGCTTCTGAGGGGCCGATGTACGGCATCTTGGGTTACACTGAGGACGA
EST: gi|37842046|gb|BJ600054.1|BJ600054
EST:     GTGCGTCTCCAAAAGAGCGGCTCATACGAGGACATCAAGGCAGCCATCAA                         GGCCGCTTCTGAGGGGCCGGTGTACGGCATCTTGGGTTACACTGAGGACGA
genomic: GTGCGTCTCCAAAAGAGCGGCTCATACGAGGACATCAAGGCAGCCATCAAgtgagggatc ... atgattgcagGGCCGCTTCTGAGGGGCCGATGTACGGCATCTTGGGTTACACTGAGGACGA
EST: gi|208388689|gb|DC953451.1|DC953451
EST:     GTGCGTCTCCAAAAGAGCGGCTCATACGAGGACATCAAGGCAGCCATCAA                         GGCCGCTTCTGAGGGGCCGATGTACGGCATCTTGGGTTACACTGAGGACGA
genomic: GTGCGTCTCCAAAAGAGCGGCTCATACGAGGACATCAAGGCAGCCATCAAgtgagggatc ... atgattgcagGGCCGCTTCTGAGGGGCCGATGTACGGCATCTTGGGTTACACTGAGGACGA
EST: gi|67726344|gb|BJ976603.1|BJ976603
EST:     GTGCGTCTCCAAAAGAGCGGCTCATACGAGGACATCAAGGCAGCCATCAA                         GGCTGCTTCTGAGGGGCCGATGTACGGCATCTTGGGTTACACTGAGGACGA
genomic: GTGCGTCTCCAAAAGAGCGGCTCATACGAGGACATCAAGGCAGCCATCAAgtgagggatc ... atgattgcagGGCCGCTTCTGAGGGGCCGATGTACGGCATCTTGGGTTACACTGAGGACGA
EST: gi|37836773|gb|BJ594781.1|BJ594781
EST:     GTGCGTCTCCAAAAGAGCGGCTCATACGAGGACATCAAGGCAGCCATCAA                         GGCCGCTTCTGAGGGGCCGATGTACGGCATCTTGGGTTACACTGAGGACGA
genomic: GTGCGTCTCCAAAAGAGCGGCTCATACGAGGACATCAAGGCAGCCATCAAgtgagggatc ... atgattgcagGGCCGCTTCTGAGGGGCCGATGTACGGCATCTTGGGTTACACTGAGGACGA
EST: gi|37831794|gb|BJ589806.1|BJ589806
EST:     GTGCGTCTCCAAAAGAGCGGCTCATACGAGGACATCAAGGCAGCCATCAA                         GGCCGCTTCTGAGGGGCCGATGTACGGCATCTTGGGTTACACTGAGGACGA
genomic: GTGCGTCTCCAAAAGAGCGGCTCATACGAGGACATCAAGGCAGCCATCAAgtgagggatc ... atgattgcagGGCCGCTTCTGAGGGGCCGATGTACGGCATCTTGGGTTACACTGAGGACGA
EST: gi|208362874|gb|DC950824.1|DC950824
EST:     GTGCGTCTCCAAAAGAGCGGCTCATACGAGGACATCAAGGCAGCCATCAN                         GGCCGCTTCTGAGGGGCCGATGTACGGCATCTTGGGTTACACTGAGGACGA
genomic: GTGCGTCTCCAAAAGAGCGGCTCATACGAGGACATCAAGGCAGCCATCAAgtgagggatc ... atgattgcagGGCCGCTTCTGAGGGGCCGATGTACGGCATCTTGGGTTACACTGAGGACGA
EST: gi|18341262|gb|BJ173296.1|BJ173296
EST:     GTGCGTCTCCAAAAGAGCGGCTCATACGAGGACATCAAGGCAGCCATCAA                         GGCCGCTTCTGAGGGGCCGATGTACGGCATCTTGGGTTACACTGAGGACGA
genomic: GTGCGTCTCCAAAAGAGCGGCTCATACGAGGACATCAAGGCAGCCATCAAgtgagggatc ... atgattgcagGGCCGCTTCTGAGGGGCCGATGTACGGCATCTTGGGTTACACTGAGGACGA
EST: gi|67725319|gb|BJ975578.1|BJ975578
EST:     GTGCGTCTCCAAAAGAGCGGCTCATACGAGGACATCAAGGCAGCCATCAA                         GGCCGCTTCTGAGGGGCCGATGTACGGCATCTTGGGTTACACTGAGGACGA
genomic: GTGCGTCTCCAAAAGAGCGGCTCATACGAGGACATCAAGGCAGCCATCAAgtgagggatc ... atgattgcagGGCCGCTTCTGAGGGGCCGATGTACGGCATCTTGGGTTACACTGAGGACGA
EST: gi|208368330|gb|DC955527.1|DC955527
EST:     GTGCGTCTCCAAAAGAGCGGCTCATACGAGGACATCAAGGCAGCCATCAA                         GGCCGCTTCTGAGGGGCCGATGTACGGCATCTTGGGTTACACTGAGGACGA
genomic: GTGCGTCTCCAAAAGAGCGGCTCATACGAGGACATCAAGGCAGCCATCAAgtgagggatc ... atgattgcagGGCCGCTTCTGAGGGGCCGATGTACGGCATCTTGGGTTACACTGAGGACGA
EST: gi|37830651|gb|BJ588663.1|BJ588663
EST:     CTCCAAAAGAGCGGCTCATACGAGGACATCAAGGCAGCCATCAA                         GGCCGCTTCTGAGGGGCCGATGTACGGCATCTTGGGTTACACTGAGGACGA
genomic: CTCCAAAAGAGCGGCTCATACGAGGACATCAAGGCAGCCATCAAgtgagggatc ... atgattgcagGGCCGCTTCTGAGGGGCCGATGTACGGCATCTTGGGTTACACTGAGGACGA
EST: gi|208362848|gb|DC950798.1|DC950798
EST:     GTGCGTCTCCAAAAGAGCGGCTCATACGAGGACATCAAGGCAGCCATCAA                         GGCCGCCTCTGAGGGGCCGATGTACGGCATCTTGGGTTACACTGAGGACGA
genomic: GTGCGTCTCCAAAAGAGCGGCTCATACGAGGACATCAAGGCAGCCATCAAgtgagggatc ... atgattgcagGGCCGCTTCTGAGGGGCCGATGTACGGCATCTTGGGTTACACTGAGGACGA
EST: gi|67726181|gb|BJ976440.1|BJ976440
EST:     GTGCGTCTCCAAAAGAGCGGCTCATACGAGGACATCAAGGCAGCCATCAA                         GGCCGCTTCTGAGGGGCCGATGTACGGCATCTTGGGTTACACTGAGGACGA
genomic: GTGCGTCTCCAAAAGAGCGGCTCATACGAGGACATCAAGGCAGCCATCAAgtgagggatc ... atgattgcagGGCCGCTTCTGAGGGGCCGATGTACGGCATCTTGGGTTACACTGAGGACGA
EST: gi|208386536|gb|DC952745.1|DC952745
EST:     GTGCGTCTCCAAAAGAGCGGCTCATACGAGGACATCAAGGCAGCCATCAA                         GGCCGCTTCTGAGGGGCCGATGTACGGCATCTTGGGTTACACTGAGGACGA
genomic: GTGCGTCTCCAAAAGAGCGGCTCATACGAGGACATCAAGGCAGCCATCAAgtgagggatc ... atgattgcagGGCCGCTTCTGAGGGGCCGATGTACGGCATCTTGGGTTACACTGAGGACGA
EST: gi|208388805|gb|DC945381.1|DC945381
EST:     GTGCGTCTCCAAAAGAGCGGCTCATACGAGGACATCAAGGCAGCCATCAA                         GGCCGCTTCTGAGGGGCCGATGTACGGCATCTTGGGTTACACTGAGGACGA
genomic: GTGCGTCTCCAAAAGAGCGGCTCATACGAGGACATCAAGGCAGCCATCAAgtgagggatc ... atgattgcagGGCCGCTTCTGAGGGGCCGATGTACGGCATCTTGGGTTACACTGAGGACGA
EST: gi|208368880|gb|DC947438.1|DC947438
EST:     GTGCGTCTCCAAAAGAGCGGCTCATACGAGGACATCAAGGCAGCCATCAA                         GGCCGCTTCTGAGGGGCCGATGTACGGCATCTTGGGTTACACTGAGGACGA
genomic: GTGCGTCTCCAAAAGAGCGGCTCATACGAGGACATCAAGGCAGCCATCAAgtgagggatc ... atgattgcagGGCCGCTTCTGAGGGGCCGATGTACGGCATCTTGGGTTACACTGAGGACGA
EST: gi|37848398|gb|BJ606406.1|BJ606406
EST:     GTGCGTCTCCAAAAGAGCGGCTCATACGAGGACATCAAGGCAGCCATCAA                         GGCCGCTTCTGAGGGGCCGATGTACGGCATCTTGGGTTACACTGAGGACGA
genomic: GTGCGTCTCCAAAAGAGCGGCTCATACGAGGACATCAAGGCAGCCATCAAgtgagggatc ... atgattgcagGGCCGCTTCTGAGGGGCCGATGTACGGCATCTTGGGTTACACTGAGGACGA
EST: gi|208369277|gb|DC956068.1|DC956068
EST:     GTGCGTCTCCAAAAGAGCGGCTCATACGAGGACATCAAGGCAGCCATCAA                         GGCCGCTTCTGAGGGGCCGATGTACGGCATCTTGGGTTACACTGAGGACGA
genomic: GTGCGTCTCCAAAAGAGCGGCTCATACGAGGACATCAAGGCAGCCATCAAgtgagggatc ... atgattgcagGGCCGCTTCTGAGGGGCCGATGTACGGCATCTTGGGTTACACTGAGGACGA
EST: gi|67724340|gb|BJ974599.1|BJ974599
EST:     GTGCGTCTCCAAAAGAGCGGCTCATACGAGGACATCAAGGCAGCCATCAA                         GGCCGCTTCTGAGGGGCCGATGTACGGCATCTTGGGTTACACTGAGGACGA
genomic: GTGCGTCTCCAAAAGAGCGGCTCATACGAGGACATCAAGGCAGCCATCAAgtgagggatc ... atgattgcagGGCCGCTTCTGAGGGGCCGATGTACGGCATCTTGGGTTACACTGAGGACGA
EST: gi|67725809|gb|BJ976068.1|BJ976068
EST:     GTGCGTCTCCAAAAGAGCGGCTCATACGAGGACATCAAGGCAGCCATCAA                         GGCCGCTTCTGAGGGGCCGATGTACGGCATCTTGGGTTACACTGAGGACGA
genomic: GTGCGTCTCCAAAAGAGCGGCTCATACGAGGACATCAAGGCAGCCATCAAgtgagggatc ... atgattgcagGGCCGCTTCTGAGGGGCCGATGTACGGCATCTTGGGTTACACTGAGGACGA
EST: gi|37842054|gb|BJ600062.1|BJ600062
EST:     GTGCGTCTCCAAAAGAGCGGCTCATACGAGGACATCAAGGCAGCCATCAA                         GGCCGCTTCTGAGGGGCCGGTGTACGGCATCTTGGGTTACACTGAGGACGA
genomic: GTGCGTCTCCAAAAGAGCGGCTCATACGAGGACATCAAGGCAGCCATCAAgtgagggatc ... atgattgcagGGCCGCTTCTGAGGGGCCGATGTACGGCATCTTGGGTTACACTGAGGACGA
EST: gi|37824920|gb|BJ582986.1|BJ582986
EST:     GTGCGTCTCCAAAAGAGCGGCTCATACGAGGACATCAAGGCAGCCATCAA                         GGCCGCTTCTGAGGGGCCGATGTACGGCATCTTGGGTTACACTGAGGACGA
genomic: GTGCGTCTCCAAAAGAGCGGCTCATACGAGGACATCAAGGCAGCCATCAAgtgagggatc ... atgattgcagGGCCGCTTCTGAGGGGCCGATGTACGGCATCTTGGGTTACACTGAGGACGA
EST: gi|67698388|gb|BJ958621.1|BJ958621
EST:     GTGCGTCTCCAAAAGAGCGGCTCATNCGAGGACATCAAGGCAGCCATCAA                         GGCCGCTTCTGAGGGGCCGATGTACGGCATCTTGGGTTACACTGAGGACGA
genomic: GTGCGTCTCCAAAAGAGCGGCTCATACGAGGACATCAAGGCAGCCATCAAgtgagggatc ... atgattgcagGGCCGCTTCTGAGGGGCCGATGTACGGCATCTTGGGTTACACTGAGGACGA
EST: gi|208360362|gb|DC950003.1|DC950003
EST:     GTGCGTCTCCAAAAGAGCGGCTCATACGAGGACATCAAGGCAGCCATCAA                         GGCCGCTTCTGAGGGGCCGATGTACGGCATCTTGGGTTACACTGAGGACGA
genomic: GTGCGTCTCCAAAAGAGCGGCTCATACGAGGACATCAAGGCAGCCATCAAgtgagggatc ... atgattgcagGGCCGCTTCTGAGGGGCCGATGTACGGCATCTTGGGTTACACTGAGGACGA
EST: gi|37827902|gb|BJ585914.1|BJ585914
EST:     GTGCGTCTCCAAAAGAGCGGCTCATACGAGGACATCAAGGCAGCCATCAA                         GGCCGCTTCTGAGGGGCCGATGTACGGCATCTTGGGTTACACTGAGGACGA
genomic: GTGCGTCTCCAAAAGAGCGGCTCATACGAGGACATCAAGGCAGCCATCAAgtgagggatc ... atgattgcagGGCCGCTTCTGAGGGGCCGATGTACGGCATCTTGGGTTACACTGAGGACGA
EST: gi|37844908|gb|BJ602916.1|BJ602916
EST:     GTGCGTCTCCAAAAGAGCGGCTCATACGAGGACATCAAGGCAGCCATCAA                         GGCCGCTTCTGAGGGGCCGATGTACGGCATCTTGGGTTACACTGAGGACGA
genomic: GTGCGTCTCCAAAAGAGCGGCTCATACGAGGACATCAAGGCAGCCATCAAgtgagggatc ... atgattgcagGGCCGCTTCTGAGGGGCCGATGTACGGCATCTTGGGTTACACTGAGGACGA
EST: gi|67723795|gb|BJ974054.1|BJ974054
EST:     GTGCGTCTCCAAAAGAGCGGCTCATACGAGGACATCAAGGCAGCCATCAA                         GGCCGCTTCTGAGGGGCCGATGTACGGCATCTTGGGTTACACTGAGGACGA
genomic: GTGCGTCTCCAAAAGAGCGGCTCATACGAGGACATCAAGGCAGCCATCAAgtgagggatc ... atgattgcagGGCCGCTTCTGAGGGGCCGATGTACGGCATCTTGGGTTACACTGAGGACGA
EST: gi|67696731|gb|BJ956964.1|BJ956964
EST:     GTGCGTCTCCAAAAGAGCGGCTCATACGAGGACATCAAGGCAGCCATCAA                         GGCCGCTTCTGAGGGGCCGATGTACGGCATCTTGGGTTACACTGAGGACGA
genomic: GTGCGTCTCCAAAAGAGCGGCTCATACGAGGACATCAAGGCAGCCATCAAgtgagggatc ... atgattgcagGGCCGCTTCTGAGGGGCCGATGTACGGCATCTTGGGTTACACTGAGGACGA
EST: gi|67720154|gb|BJ970413.1|BJ970413
EST:     GTGCGTCTCCAAAAGAGCGGCTCATACGAGGACATCAAGGCAGCCATCAA                         GGCCGCTTCTGAGGGGCCGATGTACGGCATCTTGGGTTACACTGAGGACGA
genomic: GTGCGTCTCCAAAAGAGCGGCTCATACGAGGACATCAAGGCAGCCATCAAgtgagggatc ... atgattgcagGGCCGCTTCTGAGGGGCCGATGTACGGCATCTTGGGTTACACTGAGGACGA
EST: gi|37851983|gb|BJ609991.1|BJ609991
EST:     GTGCGTCTCCAAAAGAGCGGCTCATACGAGGACATCAAGGCAGCCATCAA                         GGCCGCTTCTGAGGGGCCGATGTACGGCATCTTGGGTTACACTGAGGACGA
genomic: GTGCGTCTCCAAAAGAGCGGCTCATACGAGGACATCAAGGCAGCCATCAAgtgagggatc ... atgattgcagGGCCGCTTCTGAGGGGCCGATGTACGGCATCTTGGGTTACACTGAGGACGA
EST: gi|67724127|gb|BJ974386.1|BJ974386
EST:     GTGCGTCTCCAAAAGAGCGGCTCATACGAGGACATCAAGGCAGCCATCAA                         GGCCGCTTCTGAGGGGCCGATGTACGGCATCTTGGGTTACACTGAGGACGA
genomic: GTGCGTCTCCAAAAGAGCGGCTCATACGAGGACATCAAGGCAGCCATCAAgtgagggatc ... atgattgcagGGCCGCTTCTGAGGGGCCGATGTACGGCATCTTGGGTTACACTGAGGACGA
EST: gi|37833256|gb|BJ591268.1|BJ591268
EST:     GTGCGTCTCCAAAAGAGCGGCTCATACGAGGACATCAAGGCAGCCATCAA                         GGCCGCTTCTGAGGGGCCGATGTACGGCATCTTGGGTTACACTGAGGACGA
genomic: GTGCGTCTCCAAAAGAGCGGCTCATACGAGGACATCAAGGCAGCCATCAAgtgagggatc ... atgattgcagGGCCGCTTCTGAGGGGCCGATGTACGGCATCTTGGGTTACACTGAGGACGA
EST: gi|67723853|gb|BJ974112.1|BJ974112
EST:     GTGCGTCTCCAAAAGAGCGGCTCATACGAGGACATCAAGGCAGCCATCAA                         GGCCGCTTCTGAGGGGCCGATGTACGGCATCTTGGGTTACACTGAGGACGA
genomic: GTGCGTCTCCAAAAGAGCGGCTCATACGAGGACATCAAGGCAGCCATCAAgtgagggatc ... atgattgcagGGCCGCTTCTGAGGGGCCGATGTACGGCATCTTGGGTTACACTGAGGACGA
EST: gi|162271002|gb|FC447407.1|FC447407
EST:     GTGCGTCTCCAAAAGAGCGGCTCATACGAGGACATCAAGGCAGCCATCAA                         GGCCGCTTCTGAGGGGCCGATGTACGGCATCTTGGGTTACACTGAGGACGA
genomic: GTGCGTCTCCAAAAGAGCGGCTCATACGAGGACATCAAGGCAGCCATCAAgtgagggatc ... atgattgcagGGCCGCTTCTGAGGGGCCGATGTACGGCATCTTGGGTTACACTGAGGACGA
EST: gi|67720688|gb|BJ970947.1|BJ970947
EST:     GTGCGTCTCCAAAAGAGCGGCTCATACGAGGACATCAAGGCAGCCATCAA                         GGCCGCTTCTGAGGGGCCGATGTACGGCATCTTGGGTTACACTGAGGACGA
genomic: GTGCGTCTCCAAAAGAGCGGCTCATACGAGGACATCAAGGCAGCCATCAAgtgagggatc ... atgattgcagGGCCGCTTCTGAGGGGCCGATGTACGGCATCTTGGGTTACACTGAGGACGA
EST: gi|208361174|gb|DC954280.1|DC954280
EST:     GTGCGTCTCCAAAAGAGCGGCTCATACGAGGACATCAAGGCAGCCATCAA                         GGCCGCTTCTGAGGGGCCGATGTACGGCATCTTGGGTTACACTGAGGACGA
genomic: GTGCGTCTCCAAAAGAGCGGCTCATACGAGGACATCAAGGCAGCCATCAAgtgagggatc ... atgattgcagGGCCGCTTCTGAGGGGCCGATGTACGGCATCTTGGGTTACACTGAGGACGA
EST: gi|208361238|gb|DC957707.1|DC957707
EST:     GTGCGTCTCCAAAAGAGCGGCTCATACGAGGACATCAAGGCAGCCATCAA                         GGCCGCTTCTGAGGGGCCGATGTACGGCATCTTGGGTTACACTGAGGACGA
genomic: GTGCGTCTCCAAAAGAGCGGCTCATACGAGGACATCAAGGCAGCCATCAAgtgagggatc ... atgattgcagGGCCGCTTCTGAGGGGCCGATGTACGGCATCTTGGGTTACACTGAGGACGA
EST: gi|37841608|gb|BJ599616.1|BJ599616
EST:     GTGCGTCTCCAAAAGAGCGGCTCATACGAGGACATCAAGGCAGCCATCAA                         GGCCGCTTCTGAGGGGCCGATGTACGGCATCTTGGGTTACACTGAGGACGA
genomic: GTGCGTCTCCAAAAGAGCGGCTCATACGAGGACATCAAGGCAGCCATCAAgtgagggatc ... atgattgcagGGCCGCTTCTGAGGGGCCGATGTACGGCATCTTGGGTTACACTGAGGACGA
EST: gi|208373682|gb|DC952507.1|DC952507
EST:     GTGCGTCTCCAAAAGAGCGGCTCATACGAGGACATCAAGGCAGCCATCAA                         GGCCGCTTCTGAGGGGCCGATGTACGGCATCTTGGGTTACACTGAGGACGA
genomic: GTGCGTCTCCAAAAGAGCGGCTCATACGAGGACATCAAGGCAGCCATCAAgtgagggatc ... atgattgcagGGCCGCTTCTGAGGGGCCGATGTACGGCATCTTGGGTTACACTGAGGACGA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 34 (downstream exon)
Score: 10

GTATGGCTTTCCGTGTCCCGACTCCCAATGTGTCTGTGGTGGATCTGACTGTGCGTCTCCAAAAGAGCGGCTCATACGAGGACATCAAGGCAGCCATCAAgtgagggatc ... atgattgcagGGCCGCTTCTGAGGGGCCGATGTACGGCATCTTGGGTTACACTGAGGACGATGTTGTGTCCAATGATTTCGTTGGTGATGCGAG




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