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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTATGGCTTTCCGTGTGCCAACTCCCAATGTGTCTGTGGTAGACCTGACCGTGCGACTCCAGAAGAGTGGCTCATACGAGGATATCAAGGCAGCCATCAAgtgaggaattgtttgagaatgcatttttctgtaaaaatgtgctgaagtgtagtggtttagagttgtcgtgcaaggttgaggaggctggtaacgagtcgctgccactgacaacgggaggcatggttttgtgcgaatgattgcag

Basic information

species Physcomitrella patens
transcript PP1S309_73V6.2
intron # 9
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208386569|gb|DC952764.1|DC952764
EST:     GTGCGACTCCAGAAGAGTGGCTCATACGAGGATATCAAGGCAGCCATCAA                         GGCCGCTTCTGAGGGTCCGATGAACGGCATCCTGGGTTACACTGAGGACGA
genomic: GTGCGACTCCAGAAGAGTGGCTCATACGAGGATATCAAGGCAGCCATCAAgtgaggaatt ... atgattgcagGGCCGCTTCTGAGGGTCCGATGAACGGCATCCTGGGTTACACTGAGGACGA
EST: gi|15590664|gb|BI675280.1|BI675280
EST:     GTGCGACTCCAGAAGAGTGGCTCATACGAGGATATCAAGGCAGCCATCAA                         GGCCGCTTCTGAGGGTCCGATGAACGGCATCCTGGGTTACACTGAGGACGA
genomic: GTGCGACTCCAGAAGAGTGGCTCATACGAGGATATCAAGGCAGCCATCAAgtgaggaatt ... atgattgcagGGCCGCTTCTGAGGGTCCGATGAACGGCATCCTGGGTTACACTGAGGACGA
EST: gi|18337239|gb|BJ169263.1|BJ169263
EST:     GTGCGACTCCAGAAGAGTGGCTCATACGAGGATATCAAGGCAGCCATCAA                         GGCCGCTTCTGAGGGTCCGATGAACGGCATCCTGGGTTACACTGAGGACGA
genomic: GTGCGACTCCAGAAGAGTGGCTCATACGAGGATATCAAGGCAGCCATCAAgtgaggaatt ... atgattgcagGGCCGCTTCTGAGGGTCCGATGAACGGCATCCTGGGTTACACTGAGGACGA
EST: gi|67727324|gb|BJ977583.1|BJ977583
EST:     GTGCGACTCCAGAAGAGTGGCTCATACGAGGATATCAAGGCAGCCATCAA                         GGCCGCTTCTGAGGGTCCGATGAACGGCATCCTGGGTTACACTGAGGACGA
genomic: GTGCGACTCCAGAAGAGTGGCTCATACGAGGATATCAAGGCAGCCATCAAgtgaggaatt ... atgattgcagGGCCGCTTCTGAGGGTCCGATGAACGGCATCCTGGGTTACACTGAGGACGA
EST: gi|208372490|gb|DC948730.1|DC948730
EST:     GTGCGACTCCAGAAGAGTGGCTCATACGAGGATATCAAGGCAGCCATCAA                         GGCCGCTTCTGAGGGTCCGATGAACGGCATCCTGGGTTACACTGAGGACGA
genomic: GTGCGACTCCAGAAGAGTGGCTCATACGAGGATATCAAGGCAGCCATCAAgtgaggaatt ... atgattgcagGGCCGCTTCTGAGGGTCCGATGAACGGCATCCTGGGTTACACTGAGGACGA
EST: gi|208374872|gb|DC956145.1|DC956145
EST:     GTGCGACTCCAGAAGAGTGGCTCATACGAGGATATCAAGGCAGCCATCAA                         GGCCGCTTCTGAGGGTCCGATGAACGGCATCCTGGGTTACACTGAGGACGA
genomic: GTGCGACTCCAGAAGAGTGGCTCATACGAGGATATCAAGGCAGCCATCAAgtgaggaatt ... atgattgcagGGCCGCTTCTGAGGGTCCGATGAACGGCATCCTGGGTTACACTGAGGACGA
EST: gi|67727955|gb|BJ978214.1|BJ978214
EST:     GTGCGACTCCAGAAGAGTGGCTCATACGAGGATATCAAGGCAGCCATCAA                         GGCCGCTTCTGAGGGTCCGATGAACGGCATCCTGGGTTACACTGAGGACGA
genomic: GTGCGACTCCAGAAGAGTGGCTCATACGAGGATATCAAGGCAGCCATCAAgtgaggaatt ... atgattgcagGGCCGCTTCTGAGGGTCCGATGAACGGCATCCTGGGTTACACTGAGGACGA
EST: gi|208389192|gb|DC945768.1|DC945768
EST:     GTGCGACTCCAGAAGAGTGGCTCATACGAGGATATCAAGGCAGCCATCAA                         GGCCGCTTCTGAGGGTCCGATGAACGGCATCCTGGGTTACACTGAGGACGA
genomic: GTGCGACTCCAGAAGAGTGGCTCATACGAGGATATCAAGGCAGCCATCAAgtgaggaatt ... atgattgcagGGCCGCTTCTGAGGGTCCGATGAACGGCATCCTGGGTTACACTGAGGACGA
EST: gi|67720368|gb|BJ970627.1|BJ970627
EST:     GTGCGACTCCAGAAGAGTGGCTCATACGAGGATATCAAGGCAGCCATCAA                         GGCCGCTTCTGAGGGTCCGATGAACGGCATCCTGGGTTACACTGAGGACGA
genomic: GTGCGACTCCAGAAGAGTGGCTCATACGAGGATATCAAGGCAGCCATCAAgtgaggaatt ... atgattgcagGGCCGCTTCTGAGGGTCCGATGAACGGCATCCTGGGTTACACTGAGGACGA
EST: gi|18336858|gb|BJ168881.1|BJ168881
EST:     GTGCGACTCCAGAAGAGTGGCTCATACGAGGATATCAAGGCAGCCATCAA                         GGCCGCTTCTGAGGGTCCGATGAACGGCATCCTGGGTTACACTGAGGACGA
genomic: GTGCGACTCCAGAAGAGTGGCTCATACGAGGATATCAAGGCAGCCATCAAgtgaggaatt ... atgattgcagGGCCGCTTCTGAGGGTCCGATGAACGGCATCCTGGGTTACACTGAGGACGA
EST: gi|37848736|gb|BJ606744.1|BJ606744
EST:     GTGCGACTCCAGAAGAGTGGCTCATACGAGGATATCAAGGCAGCCATCAA                         GGCCGCTTCTGAGGGGTCCGATGAACGGCATCCTGGGTTACACTGAGGACG
genomic: GTGCGACTCCAGAAGAGTGGCTCATACGAGGATATCAAGGCAGCCATCAAgtgaggaatt ... atgattgcagGGCCGCTTCTGA-GGGTCCGATGAACGGCATCCTGGGTTACACTGAGGACG
EST: gi|208369274|gb|DC956065.1|DC956065
EST:     GTGCGACTCCAGAAGAGTGGCTCATACGAGGATATCAAGGCAGCCATCAA                         GGCCGCTTCTGAGGGTCCGATGAACGGCATCCTGGGTTACACTGAGGACGA
genomic: GTGCGACTCCAGAAGAGTGGCTCATACGAGGATATCAAGGCAGCCATCAAgtgaggaatt ... atgattgcagGGCCGCTTCTGAGGGTCCGATGAACGGCATCCTGGGTTACACTGAGGACGA
EST: gi|67727959|gb|BJ978218.1|BJ978218
EST:     GTGCGACTCCAGAAGAGTGGCTCATACGAGGATATCAAGGCAGCCATCAA                         GGCCGCTTCTGAGGGTCCGATGAACGGCATCCTGGGTTACACTGAGGACGA
genomic: GTGCGACTCCAGAAGAGTGGCTCATACGAGGATATCAAGGCAGCCATCAAgtgaggaatt ... atgattgcagGGCCGCTTCTGAGGGTCCGATGAACGGCATCCTGGGTTACACTGAGGACGA
EST: gi|162152341|gb|FC328528.1|FC328528
EST:     GTGCGACTCCAGAAGAGTGGCTCATACGAGGATATCAAGGCAGCCATCAA                         GGCCGCTTCTGAGGGTCCGATGAACGGCATCCTGGGTTACACTGAGGATGA
genomic: GTGCGACTCCAGAAGAGTGGCTCATACGAGGATATCAAGGCAGCCATCAAgtgaggaatt ... atgattgcagGGCCGCTTCTGAGGGTCCGATGAACGGCATCCTGGGTTACACTGAGGACGA
EST: gi|208367067|gb|DC947801.1|DC947801
EST:     GTGCGACTCCAGAAGAGTGGCTCATACGAGGATATCAAGGCAGCCATCAA                         GGCCGCTTCTGAGGGTCCGATGAACGGCATCCTGGGTTACACTGAGGACGA
genomic: GTGCGACTCCAGAAGAGTGGCTCATACGAGGATATCAAGGCAGCCATCAAgtgaggaatt ... atgattgcagGGCCGCTTCTGAGGGTCCGATGAACGGCATCCTGGGTTACACTGAGGACGA
EST: gi|208373126|gb|DC948891.1|DC948891
EST:     GTGCGACTCCAGAAGAGTGGCTCATACGAGGATATCAAGGCAGCCATCAA                         GGCCGCTTCTGAGGGTCCGATGAACGGCATCCTGGGTTACACTGAGGACGA
genomic: GTGCGACTCCAGAAGAGTGGCTCATACGAGGATATCAAGGCAGCCATCAAgtgaggaatt ... atgattgcagGGCCGCTTCTGAGGGTCCGATGAACGGCATCCTGGGTTACACTGAGGACGA
EST: gi|67723914|gb|BJ974173.1|BJ974173
EST:     GTGCGACTCCAGAAGAGTGGCTCATACGAGGATATCAAGGCAGCCATCAA                         GGCCGCTTCTGAGGGTCCGATGAACGGCATCCTGGGTTACACTGAGGACGA
genomic: GTGCGACTCCAGAAGAGTGGCTCATACGAGGATATCAAGGCAGCCATCAAgtgaggaatt ... atgattgcagGGCCGCTTCTGAGGGTCCGATGAACGGCATCCTGGGTTACACTGAGGACGA
EST: gi|208371298|gb|DC944462.1|DC944462
EST:     GTGCGACTCCAGAAGAGTGGCTCATACGAGGATATCAAGGCAGCCATCAA                         GGCCGCTTCTGAGGGTCCGATGAACGGCATCCTGGGTTACACTGAGGACGA
genomic: GTGCGACTCCAGAAGAGTGGCTCATACGAGGATATCAAGGCAGCCATCAAgtgaggaatt ... atgattgcagGGCCGCTTCTGAGGGTCCGATGAACGGCATCCTGGGTTACACTGAGGACGA
EST: gi|67724745|gb|BJ975004.1|BJ975004
EST:     GTGCGACTCCAGAAGAGTGGCTCATACGAGGATATCAAGGCAGCCATCAA                         GGCCGCTTCTGAGGGTCCGATGAACGGCATCCTGGGTTACACTGAGGACGA
genomic: GTGCGACTCCAGAAGAGTGGCTCATACGAGGATATCAAGGCAGCCATCAAgtgaggaatt ... atgattgcagGGCCGCTTCTGAGGGTCCGATGAACGGCATCCTGGGTTACACTGAGGACGA
EST: gi|37821494|gb|BJ579560.1|BJ579560
EST:     GTGCGACTCCAGAAGAGTGGCTCATACGAGGATATCAAGGCAGCCATCAA                         GGCCGCTTCTGAGGGTCCGATGAACGGCATCCTGGGTTACACTGAGGACGA
genomic: GTGCGACTCCAGAAGAGTGGCTCATACGAGGATATCAAGGCAGCCATCAAgtgaggaatt ... atgattgcagGGCCGCTTCTGAGGGTCCGATGAACGGCATCCTGGGTTACACTGAGGACGA
EST: gi|67725323|gb|BJ975582.1|BJ975582
EST:     GTGCGACTCCAGAAGAGTGGCTCATACGAGGATATCAAGGCAGCCATCAA                         GGCCGCTTCTGAGGGTCCGATGAACGGCATCCTGGGTTACACTGAGGACGA
genomic: GTGCGACTCCAGAAGAGTGGCTCATACGAGGATATCAAGGCAGCCATCAAgtgaggaatt ... atgattgcagGGCCGCTTCTGAGGGTCCGATGAACGGCATCCTGGGTTACACTGAGGACGA
EST: gi|208393917|gb|DC946127.1|DC946127
EST:     GTGCGACTCCAGAAGAGTGGCTCATACGAGGATATCAAGGCAGCCATCAA                         GGCCNCTTCTGAGGGTCCGATGAACGGCATCCTGGGTTACACTGAGGACGA
genomic: GTGCGACTCCAGAAGAGTGGCTCATACGAGGATATCAAGGCAGCCATCAAgtgaggaatt ... atgattgcagGGCCGCTTCTGAGGGTCCGATGAACGGCATCCTGGGTTACACTGAGGACGA
EST: gi|67725153|gb|BJ975412.1|BJ975412
EST:     GTGCGACTCCAGAAGGGTGGCTCATACGAGGATATCAAGGCAGCCATCAA                         GGCCGCTTCTGAGGGTCCGATGAACGGCATCCTGGGTTACACTGAGGACGA
genomic: GTGCGACTCCAGAAGAGTGGCTCATACGAGGATATCAAGGCAGCCATCAAgtgaggaatt ... atgattgcagGGCCGCTTCTGAGGGTCCGATGAACGGCATCCTGGGTTACACTGAGGACGA
EST: gi|67726807|gb|BJ977066.1|BJ977066
EST:     GTGCGACTCCAGAAGAGTGGCTCATACGAGGATATCAAGGCAGCCATCAA                         GGCCGCTTCTGAGGGTCCGATGAACGGCATCCTGGGTTACACTGAGGACGA
genomic: GTGCGACTCCAGAAGAGTGGCTCATACGAGGATATCAAGGCAGCCATCAAgtgaggaatt ... atgattgcagGGCCGCTTCTGAGGGTCCGATGAACGGCATCCTGGGTTACACTGAGGACGA
EST: gi|37851285|gb|BJ609293.1|BJ609293
EST:     GTGCGACTCCAGAAGAGTGGCTCATACGAGGATATCAAGGCAGCCATCAA                         GGCCGCTTCTGAGGGTCCGATGAACGGCATCCTGGGTTACACTGAGGACGA
genomic: GTGCGACTCCAGAAGAGTGGCTCATACGAGGATATCAAGGCAGCCATCAAgtgaggaatt ... atgattgcagGGCCGCTTCTGAGGGTCCGATGAACGGCATCCTGGGTTACACTGAGGACGA
EST: gi|67725858|gb|BJ976117.1|BJ976117
EST:     GTGCGACTCCAGAAGAGTGGCTCATACGAGGATATCAAGGCAGCCATCAA                         GGCCGCTTCTGAGGGTCCGATGAACGGCATCCTGGGTTACACTGAGGACGA
genomic: GTGCGACTCCAGAAGAGTGGCTCATACGAGGATATCAAGGCAGCCATCAAgtgaggaatt ... atgattgcagGGCCGCTTCTGAGGGTCCGATGAACGGCATCCTGGGTTACACTGAGGACGA
EST: gi|208388488|gb|DC957070.1|DC957070
EST:     GTGCGACTCCAGAAGAGTGGCTCATACGAGGATATCAAGGCAGCCATCAA                         GGCCGCTTCTGAGGGTCCGATGAACGGCATCCTGGGTTACACTGAGGACGA
genomic: GTGCGACTCCAGAAGAGTGGCTCATACGAGGATATCAAGGCAGCCATCAAgtgaggaatt ... atgattgcagGGCCGCTTCTGAGGGTCCGATGAACGGCATCCTGGGTTACACTGAGGACGA
EST: gi|208394113|gb|DC957194.1|DC957194
EST:     GTGCGACTCCAGAAGAGTGGCTCATACGAGGATATCAAGGCAGCCATCAA                         GGCCGCTTCTGAGGGTCCGATGAACGGCATCCTGGGTTACACTGAGGACGA
genomic: GTGCGACTCCAGAAGAGTGGCTCATACGAGGATATCAAGGCAGCCATCAAgtgaggaatt ... atgattgcagGGCCGCTTCTGAGGGTCCGATGAACGGCATCCTGGGTTACACTGAGGACGA
EST: gi|162268831|gb|FC445679.1|FC445679
EST:     GTGCGACTCCAGAAGAGTGGCTCATACGAGGATATCAAGGCAGCCATCAA                         GGCCGCTTCTGAGGGTCCGATGAACGGCATCCTGGGTTACACTGAGGACGA
genomic: GTGCGACTCCAGAAGAGTGGCTCATACGAGGATATCAAGGCAGCCATCAAgtgaggaatt ... atgattgcagGGCCGCTTCTGAGGGTCCGATGAACGGCATCCTGGGTTACACTGAGGACGA
EST: gi|67726975|gb|BJ977234.1|BJ977234
EST:     GTGCGACTCCAGAAGAGTGGCTCATACGAGGATATCAAGGCAGCCATCAA                         GGCCGCTTCTGAGGGTCCGATGAACGGCATCCTGGGTTACACTGAGGACGA
genomic: GTGCGACTCCAGAAGAGTGGCTCATACGAGGATATCAAGGCAGCCATCAAgtgaggaatt ... atgattgcagGGCCGCTTCTGAGGGTCCGATGAACGGCATCCTGGGTTACACTGAGGACGA
EST: gi|18341731|gb|BJ173766.1|BJ173766
EST:     GTGCGACTCCAGAAGAGTGGCTCATACGAGGATATCAAGGCAGCCATCAA                         GGCCGCTTCTGAGGGTCCGATGAACGGCATCCTGGGTTACACTGAGGACGA
genomic: GTGCGACTCCAGAAGAGTGGCTCATACGAGGATATCAAGGCAGCCATCAAgtgaggaatt ... atgattgcagGGCCGCTTCTGAGGGTCCGATGAACGGCATCCTGGGTTACACTGAGGACGA
EST: gi|208351393|gb|DC921754.1|DC921754
EST:     GTGCGACTCCAGAAGAGTGGCTCATACGAGGATATCAAGGCAGCCATCAA                         GGCCGCTTCTGAGGGTCCGATGAACGGCATCCTGGGTTATACTGAGGACGA
genomic: GTGCGACTCCAGAAGAGTGGCTCATACGAGGATATCAAGGCAGCCATCAAgtgaggaatt ... atgattgcagGGCCGCTTCTGAGGGTCCGATGAACGGCATCCTGGGTTACACTGAGGACGA
EST: gi|162278138|gb|FC454373.1|FC454373
EST:     GTGCGACTCCAGAAGAGTGGCTCATACGAGGATATCAAGGCAGCCATCAA                         GGCCGCTTCTGAGGGTCCGATGAACGGCATCCTGGGTTACACTGAGGACGA
genomic: GTGCGACTCCAGAAGAGTGGCTCATACGAGGATATCAAGGCAGCCATCAAgtgaggaatt ... atgattgcagGGCCGCTTCTGAGGGTCCGATGAACGGCATCCTGGGTTACACTGAGGACGA
EST: gi|208367555|gb|DC955702.1|DC955702
EST:     GTGCGACTCCAGAAGAGTGGCTCATACGAGGATATCAAGGCAGCCATCAA                         GGCCGCTTCTGAGGGTCCGATGAACGGCATCCTGGGTTACACTGAGGACGA
genomic: GTGCGACTCCAGAAGAGTGGCTCATACGAGGATATCAAGGCAGCCATCAAgtgaggaatt ... atgattgcagGGCCGCTTCTGAGGGTCCGATGAACGGCATCCTGGGTTACACTGAGGACGA
EST: gi|18341223|gb|BJ173256.1|BJ173256
EST:     GTGCGACTCCAGAAGAGTGGCTCATACGAGGATATCAAGGCAGCCATCAA                         GGCCGCTTCTGAGGGTCCGATGAACGGCATCCTGGGTTACACTGAGGACGA
genomic: GTGCGACTCCAGAAGAGTGGCTCATACGAGGATATCAAGGCAGCCATCAAgtgaggaatt ... atgattgcagGGCCGCTTCTGAGGGTCCGATGAACGGCATCCTGGGTTACACTGAGGACGA
EST: gi|67723807|gb|BJ974066.1|BJ974066
EST:     GTGCGACTCCAGAAGAGTGGCTCATACGAGGATATCAAGGCAGCCATCAA                         GGCCGCTTCTGAGGGTCCGATGAACGGCATCCTGGGTTACACTGAGGACGA
genomic: GTGCGACTCCAGAAGAGTGGCTCATACGAGGATATCAAGGCAGCCATCAAgtgaggaatt ... atgattgcagGGCCGCTTCTGAGGGTCCGATGAACGGCATCCTGGGTTACACTGAGGACGA
EST: gi|208389399|gb|DC953237.1|DC953237
EST:     GTGCGACTCCAGAAGAGTGGCTCATACGAGGATATCAAGGCAGCCATCAA                         GGCCGCTTCTGAGGGTCCGATGAACGGCATCCTGGGTTACACTGAGGACGA
genomic: GTGCGACTCCAGAAGAGTGGCTCATACGAGGATATCAAGGCAGCCATCAAgtgaggaatt ... atgattgcagGGCCGCTTCTGAGGGTCCGATGAACGGCATCCTGGGTTACACTGAGGACGA
EST: gi|67694183|gb|BJ954416.1|BJ954416
EST:     GTGCGACTCCAGAAGAGTGGCTCATACGAGGATATCAAGGCAGCCATCAA                         GGCCGCTTCTGAGGGTCCGATGAACGGCATCCTGGGTTACACTGAGGACGA
genomic: GTGCGACTCCAGAAGAGTGGCTCATACGAGGATATCAAGGCAGCCATCAAgtgaggaatt ... atgattgcagGGCCGCTTCTGAGGGTCCGATGAACGGCATCCTGGGTTACACTGAGGACGA
EST: gi|67724801|gb|BJ975060.1|BJ975060
EST:     GTGCGACTCCAGAAGAGTGGCTCATACGAGGATATCAAGGCAGCCATCAA                         GGCCGCTTCTGAGGGTCCGATGAACGGCATCCTGGGTTACACTGAGGACGA
genomic: GTGCGACTCCAGAAGAGTGGCTCATACGAGGATATCAAGGCAGCCATCAAgtgaggaatt ... atgattgcagGGCCGCTTCTGAGGGTCCGATGAACGGCATCCTGGGTTACACTGAGGACGA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTATGGCTTTCCGTGTGCCAACTCCCAATGTGTCTGTGGTAGACCTGACCGTGCGACTCCAGAAGAGTGGCTCATACGAGGATATCAAGGCAGCCATCAAgtgaggaattgtttgagaatgcatttttctgtaaaaatgtgctgaagtgtagtggtttagagttgtcgtgcaaggttgaggaggctggtaacgagtcgctgccactgacaacgggaggcatggttttgtgcgaatgattgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGGAT