Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTTTGGGGACACCGACTCGTGAGGAGATCAAGTGCATGAATCCGAACTACACAGAGTTCAAGTTTCCACAAATCAAGGCGCACCCGTGGCACAAAgtatgttttttgtgcgaatgctatgatgtcatcctgggtgttgcggttgtagtgcggtagtggatgtgggtcagcctttctcgtgtagcggcattgttagttgcgtgcgtcgtggtttgttggatgttgggttttgacgacggtaaccggcgtttggtatggccgatgtgggaattgcag

Basic information

species Physcomitrella patens
transcript PP1S306_43V6.2
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S306_62V6.1 (Physcomitrella patens), 5'ss of exon 8
lower sequence: LOC_Os03g62500.1 (Oryza sativa), 5'ss of exon 10
GTTTTGGGGACACCGACTCGTGAGGAGATCAAGTGCATGAATCCGAACTACACAGAGTTCAAGTTTCCACAAATCAAGGCGCACCCGTGGCACAAAgtatgttttttgtgcg-aatgctatgatgtcatcctgggtgttgcggttgtagtgcggtagtggatgtgggtcagcctttctcgtgtagcggcattgttagttgcgtgcgtcgtggtttgttggatgttgggttttgacgacggtaaccggcgtttggtatggccgatgtgggaattgcag
|||||||| || || ||  | || ||||||||||||||||||||||||||||| |||||||| || || ||||| ||||| || || |||||||| ||||  |     | |   |    |  |   ||   | | |||     |||        |  |||    |||  | | |||  ||   |     || | |                                                                                  
GTTTTGGGTACTCCAACAAGGGAAGAGATCAAGTGCATGAATCCGAACTACACGGAGTTCAAATTCCCTCAAATTAAGGCTCATCCATGGCACAAGgtattctgcccatccttgacaaaactaatgcaatatcgatgtccgatttggtacatacttttgggacagggagatcttttaacgcaaattactat-gctgt--------------------------------------------------------------------------------

upper sequence: PP1S306_62V6.1 (Physcomitrella patens), 5'ss of exon 8
lower sequence: LOC_Os01g19150.4 (Oryza sativa), 5'ss of exon 9
GTTTTGGGGACACCGACTCGTGAGGAGATCAAGTGCATGAATCCGAACTACACAGAGTTCAAGTTTCCACAAATCAAGGCGCACCCGTGGCACAAAgtatgttttttgtgcgaatgctatgatgtcatcctgggtgttgcggttgtagtgcggtagtggatgtgggtcagcctttctcgtgtagcggcattgttagttgcgtgcgtc--gtggtttgttggatgttgggttttgacgacggtaaccggcgtttggtatggccgatgtgggaattgcag
||  |||| || || ||  | || || |||||    ||||||||||||||||| ||||| ||||| || |||||||| || ||||| |||||||| ||| |    ||   |  ||  |||  |||    ||   | |    |||   ||    |  |   | |   | |    |  | |||||     ||| |   |  | | |  |   |  ||  |   |   ||   | ||| | | |||                                   
GTACTGGGTACTCCAACAAGGGAAGAAATCAAACATATGAATCCGAACTACACTGAGTTTAAGTTCCCCCAAATCAAAGCTCACCCATGGCACAAGgtaggagcctt---cacat-ttattttgttcctcttattttcagagttaatgtctcctgcttactatttataaattataat-gtgtattctaattatgcat-actttcaccagatctttcataaaagaatgccatctgaag-ctgtag----------------------------------

upper sequence: PP1S306_62V6.1 (Physcomitrella patens), 5'ss of exon 8
lower sequence: LOC_Os01g19150.5 (Oryza sativa), 5'ss of exon 10
GTTTTGGGGACACCGACTCGTGAGGAGATCAAGTGCATGAATCCGAACTACACAGAGTTCAAGTTTCCACAAATCAAGGCGCACCCGTGGCACAAAgtatgttttttgtgcgaatgctatgatgtcatcctgggtgttgcggttgtagtgcggtagtggatgtgggtcagcctttctcgtgtagcggcattgttagttgcgtgcgtcgtggtttgttggatgttgggttttgacgacggtaaccggcgtttggtatggccgatgtgggaattgcag
||  |||| || || ||  | || || |||||    ||||||||||||||||| ||||| ||||| || |||||||| || ||||| |||||||| ||| |    ||   |  ||  |||  |||    ||   | |    |||   ||    |  |   | |   | |    || |  |||    | |||  || ||  |       |     |                                                             
GTACTGGGTACTCCAACAAGGGAAGAAATCAAACATATGAATCCGAACTACACTGAGTTTAAGTTCCCCCAAATCAAAGCTCACCCATGGCACAAGgtaggagcctt---cacat-ttattttgttcctcttattttcagagttaatgtctcctgcttactatttataaa---ttataatgt----gtatt-ctaattatgcatactttcaccag-------------------------------------------------------------

upper sequence: PP1S306_62V6.1 (Physcomitrella patens), 5'ss of exon 8
lower sequence: LOC_Os05g04340.1 (Oryza sativa), 5'ss of exon 10
GTTTTGGGGACACCGACTCGTGAGGAGATCAAGTGCATGAATCCGAACTACACAGAGTTCAAGTTTCCACAAATCAAGGCGCACCCGTGGCACAAAgtatgttttttgtgcgaatgctatgatgtcatcctgggtgttgcggttgtagtgcggtagtggatgtgggtcagcctttctcgtgtagcggcattgttagttgcgtgcgtcgtggtttgttggatgttgggttttgacgacggtaaccggcgtttggtatggccgatgtgggaattgcag
||| |||| || || || || |||||||| ||||||||||| || || ||||| ||||| || ||||| |||||||| || ||||| |||||||| |||          |  |||  | | ||||    |||  | ||    || |  |  ||| |   |  |     ||| || ||  | |     ||                                                                                       
GTTCTGGGTACCCCTACACGAGAGGAGATTAAGTGCATGAACCCAAATTACACCGAGTTTAAATTTCCGCAAATCAAAGCTCACCCATGGCACAAGgtagaa-------gaaaataatcttatgttggactgtttatttt--ttattttagggttg-aaacctaatgtagctttcctttttttttaccaccag-----------------------------------------------------------------------------------

upper sequence: PP1S306_62V6.1 (Physcomitrella patens), 5'ss of exon 8
lower sequence: LOC_Os01g14860.3 (Oryza sativa), 5'ss of exon 9
GTTTTGGGGACACCGACTCGTGAGGAGATCAAGTGCATGAATCCGAACTACACAGAGTTCAAGTTTCCACAAATCAAGGCGCACCCGTGGCACAAAgtatgttttttgtgcgaatgctatgatgtcatcctgggtgttgcggttgtagtgcggtagtggatgtgggtcagcctttctcgtgtagcggcattgttagttgcgtgcgtcgtggtttgttggatgttgggttttgacgacggtaaccggcgtttggtatggccgatgtgggaattgcag
||  | || ||||| ||  | ||||| || || ||||||||||| ||||| || ||||||||||||||||| || || || ||||| |||||||| ||      | | | | | | || |  ||| || ||      | | |   | || | |||   | ||    | | || |    ||  |     ||  ||||                                                                                
GTCCTTGGAACACCTACAAGGGAGGAAATTAAATGCATGAATCCAAACTATACCGAGTTCAAGTTTCCACAGATTAAAGCACACCCATGGCACAAGgtgcaaagtctat-ctatttctgt--tgttatact------ttcagcaatcgtccagtatcaggtg---attaaccatatatgtaaa-----atatttag--------------------------------------------------------------------------------

upper sequence: PP1S306_62V6.1 (Physcomitrella patens), 5'ss of exon 8
lower sequence: GRMZM2G138676_T01 (Zea mays), 5'ss of exon 10
GTTTTGGGGACACCGACTCGTGAGGAGATCAAGTGCATGAATCCGAACTACACAGAGTTCAAGTTTCCACAAATCAAGGCGCACCCGTGGCACAAAgtatgttttttgtgcgaatgctatgatgtcatcctgggtgttgcggttgtagtgcggtagtggatgtgggtcagcctttctcgtgtagcggcattgttagttgcgtgcgtcgtggtttgttggatgttgggttttgacgacggtaaccggcgtttggtatggccgatgtgggaattgcag
|||||||| || || ||  | || ||||||||||||||||| || ||||| || ||||||||||| |||||||| || || || ||||||||||| |||   ||  | | | |||   || || |    |||  | |       ||  ||   |||  |   |      || |      || |   |   || ||    |   ||                                                                       
GTTTTGGGTACTCCAACAAGGGAAGAGATCAAGTGCATGAACCCAAACTATACGGAGTTCAAGTTCCCACAAATTAAAGCTCATCCGTGGCACAAGgtaa--ttaatatacaaatag-ataatttagctctg--tatcatcacagtgatgtc-tagctggaattaactggcatacaaaatggatgcg---tgatatgcacaaacg-----------------------------------------------------------------------

upper sequence: PP1S306_62V6.1 (Physcomitrella patens), 5'ss of exon 8
lower sequence: GRMZM5G835235_T03 (Zea mays), 5'ss of exon 9
GTTTTGGGGACACCGACTCGTGAGGAGATCAAGTGCATGAATCCGAACTACACAGAGTTCAAGTTTCCACAAATCAAGGCGCACCCGTGGCACAAAgtatg-ttttttgtgcgaatgctatgatgtcatcctgggtgttgcggttgtagtgcggtagtggatgtgggtcagcctttctcgtgtagcggcattgttagttgcgtgcgtcgtggtttgttggatgttgggttttgacgacggtaaccggcgtttggtatggccgatgtgggaattgcag
||  | || || || ||  | || || || || |||||||| ||||| ||||||||||| ||||| ||||||||||| || ||||| |||||||| || |  |||||| | |   |  ||| ||||  |        |   | |    ||    ||   |   |     |   ||| || |  ||                                                                                            
GTCCTTGGTACTCCAACAAGGGAAGAAATTAAATGCATGAACCCGAATTACACAGAGTTTAAGTTCCCACAAATCAAAGCTCACCCATGGCACAAGgtgtaattttttctacattttttataatgttctaaaaaaactgttgctaccggtttactaactgcctttttggatattttatctttcag--------------------------------------------------------------------------------------------

upper sequence: PP1S306_62V6.1 (Physcomitrella patens), 5'ss of exon 8
lower sequence: GRMZM2G129482_T01 (Zea mays), 5'ss of exon 4
GTTTTGGGGACACCGACTCGTGAGGAGATCAAGTGCATGAATCCGAACTACACAGAGTTCAAGTTTCCACAAATCAAGGCGCACCCGTGGCACAAAgtatg-ttttttgtgcgaatgctatgatgtcatcctgggtgttgcggttgtagtgcggtagtggatgtgggtcagcctttctcgtgtagcggcattgttagttgcgtgcgtcgtggtttgttggatgttgggttttgacgacggtaaccggcgtttggtatggccgatgtgggaattgcag
||  | || || || ||  | || || || || |||||||| ||||| | ||||||||| ||||| ||||||||||| || ||||| |||||||| || |  |||||| | |   |  ||| ||||  |        |   | |  | ||    || | |   |     |   ||| || |  ||                                                                                            
GTCCTTGGTACTCCAACAAGGGAAGAAATTAAATGCATGAACCCGAATTGCACAGAGTTTAAGTTCCCACAAATCAAAGCACACCCATGGCACAAGgtgtaattttttctacattttttataatgttctaaaaaaactgttgctactggtttactaattgcctttttggatattttatctttcag--------------------------------------------------------------------------------------------

upper sequence: PP1S306_62V6.1 (Physcomitrella patens), 5'ss of exon 8
lower sequence: GRMZM2G024151_T01 (Zea mays), 5'ss of exon 9
GTTTTGGGGACACCGACTCGTGAGGAGATCAAGTGCATGAATCCGAACTACACAGAGTTCAAGTTTCCACAAATCAAGGCGCACCCGTGGCACAAAgtatgttt-tttgtgcgaatgctatgatgtcatcctgggtgttgcggttgtagtgcggtagtggatgtgggtcagcctttctcgtgtagcggcattgttagttgcgtgcgtcgtggtttgttggatgttgggttttgacgacggtaaccggcgtttggtatggccgatgtgggaattgcag
||  | || || || ||  | || || || || |||||||| || || ||||||||||| ||||| ||||||||||| || ||||| |||||||| ||       | | |    ||  | | |    |  ||  |      | |  |  || | || |   |     |  |    | |  | |  | |                                                                                         
GTCCTCGGTACGCCAACAAGGGAAGAAATTAAATGCATGAACCCAAATTACACAGAGTTTAAGTTCCCACAAATCAAAGCACACCCATGGCACAAGgtgctcaaatctttctacattttgttacaatactctaagaaaactgttactgttgtgttactaatttactttttgtacattttatctttcag-----------------------------------------------------------------------------------------

upper sequence: PP1S306_62V6.1 (Physcomitrella patens), 5'ss of exon 8
lower sequence: GRMZM2G472625_T01 (Zea mays), 5'ss of exon 9
GTTTTGGGGACACCGACTCGTGAGGAGATCAAGTGCATGAATCCGAACTACACAGAGTTCAAGTTTCCACAAATCAAGGCGCACCCGTGGCACAAAgtatgttttttgtgcgaatgctatgatgtcatcctgggtgttgcggttgtagtgcggtagtggatgtgggtcagcctttctcgtgtagcggcattgttagttgcgtgcgtcgtggtttgttggatgttgggttttgacgacggtaaccggcgtttggtatggccgatgtgggaattgcag
||| | || || || || |||||||||||    ||||||||||| ||||| || ||||||| |||||| || || ||||| || ||||||||||| ||||   | || ||  ||    ||| |    |||       |  | ||  | | |   ||  | |   |   ||   |   | ||||||  ||  ||       ||                                                                          
GTTCTTGGTACTCCAACCCGTGAGGAGATACGATGCATGAATCCCAACTATACTGAGTTCAGGTTTCCTCAGATAAAGGCTCATCCGTGGCACAAGgtat---tcttatgttaaaatcatgtttctgtccacatc--tatgattccatttcaccagcagctactg--tagttatatacttgtagcc-cacggtccaaaatgtta------------------------------------------------------------------------

upper sequence: PP1S306_62V6.1 (Physcomitrella patens), 5'ss of exon 8
lower sequence: GRMZM2G045330_T02 (Zea mays), 5'ss of exon 9
GTTTTGGGGACACCGACTCGTGAGGAGATCAAGTGCATGAATCCGAACTACACAGAGTTCAAGTTTCCACAAATCAAGGCGCACCCGTGGCACAAAgtat--gttttttgtgcgaatgctatgatgtcatc--ctgggtgttgcggttgtag----tgcggtagtggatgtg-ggtcagcctttc------tcgtgtagcggcattgttagttgcgtgcgtcgtggtttgttggatgttgggttttgacgacggtaaccggcgtttggtatggccgatgtgggaattgcag-----
||| | || || || || |||||||||||   |||||||||||| ||||| || ||||||| |||||| || || ||||| || || |||||||| ||||   | | ||     |    | || |  ||||   |     ||     || ||    ||  || ||  |  ||  |||  |  | |      |  |  |  |||  ||        ||  |  |    |      |  ||| | |  ||   |   ||        || |    |   | |  |  ||         
GTTCTTGGTACTCCAACCCGTGAGGAGATACGGTGCATGAATCCCAACTATACTGAGTTCAGGTTTCCTCAGATAAAGGCTCATCCATGGCACAAGgtattcatatgttaaatcatgtttctgttcacatctattatccattttacctgcaggtactgtagttgtatacttgtagtccacagtccaaaatgttttcaaagggcgctgaagaacttgtttgcagatcatatcgaaactttgagctcagaatgcatcaattactaactgatgcctctactttccgttttatcctccag

upper sequence: PP1S306_62V6.1 (Physcomitrella patens), 5'ss of exon 8
lower sequence: GLYMA10G01280.2 (Glycine max), 5'ss of exon 10
GTTTTGGGGACACCGACTCGTGAGGAGATCAAGTGCATGAATCCGAACTACACAGAGTTCAAGTTTCCACAAATCAAGGCGCACCCGTGGCACAAAgtatgttttttgtgcgaatgctatgatgtcatcctgggtgttgcggttgtagtgcggtagt-ggatgtgggtcagcctttctcgtgtagcggcattgttagttgcgtgcgtcgtggtttgttggatgttgggttttgacgacggtaaccggcgtttggtatggccgatgtgggaattgcag
||||| || || || ||  | || || ||||||||||||||||| || || || |||| ||| ||||||||||| || || ||||| |||||||| ||||   | |  ||  | |  |   |||||    |   ||||    ||  | |  | || |   || |   | | ||||  || |  ||                                                                                            
GTTTTAGGTACCCCAACAAGGGAAGAAATCAAGTGCATGAATCCTAATTATACCGAGTCCAAATTTCCACAAATTAAAGCTCACCCATGGCACAAGgtat---tataatgttatttttgc-atgtctatttacatgtta---tttcattatgatattcatatatatatgaaccttcatctt-cag--------------------------------------------------------------------------------------------

upper sequence: PP1S306_62V6.1 (Physcomitrella patens), 5'ss of exon 8
lower sequence: GLYMA02G01220.2 (Glycine max), 5'ss of exon 10
GTTTTGGGGACACCGACTCGTGAGGAGATCAAGTGCATGAATCCGAACTACACAGAGTTCAAGTTTCCACAAATCAAGGCGCACCCGTGGCACAAAgtatgttttttgtgcgaatgctatgatgtcatcctgggtgttgcggttgtagtgcggtagtggatgtgggtcagcctttctcgtgtagcggcattgttagttgcgtgcgtcgtggtttgttggatgttgggttttgacgacggtaaccggcgtttggtatggccgatgtgggaattgcag
||||| || || |||||  | || || |||||||| |||||||| || ||||| |||||||| ||||||||||| || || || || ||||| || ||||  |  |  |     |||     ||||    |  ||| |    ||  | || | || |  || |   | | ||||  |  |  ||                                                                                            
GTTTTAGGAACCCCGACAAGGGAAGAAATCAAGTGTATGAATCCTAATTACACCGAGTTCAAATTTCCACAAATTAAAGCTCATCCATGGCATAAGgtattgtaatgttatatttgcc----tgtccatttatgtgata---tttcattgtgatattc-atatatatgaaccttcattat-cag--------------------------------------------------------------------------------------------

upper sequence: PP1S306_62V6.1 (Physcomitrella patens), 5'ss of exon 8
lower sequence: AT4G00720.1 (Arabidopsis thaliana), 5'ss of exon 10
GTTTTGGGGACACCGACTCGTGAGGAGATCAAGTGCATGAATCCGAACTACACAGAGTTCAAGTTTCCACAAATCAAGGCGCACCCGTGGCACAAAgtatgttttttgtgcgaatgctatgatgtcatcctgggtgttgcggttgtagtgcggtagtggatgtgggtcagcctttctcgtgtagcggcattgttagttgcgtgcgtcgtggtttgttggatgttgggttttgacgacggtaaccggcgtttggtatggccgatgtgggaattgcag
 || | ||||| || ||  | || || ||   ||| ||||||||||| |||||||||||||||||||| |||||||| || |||||||||||||| || ||||   |   || | |   ||      |  || ||||    |||  | ||   |  |  |||| |   |    |  ||                                                                                                  
ATTCTTGGGACGCCTACAAGAGAAGAAATACGGTGTATGAATCCGAATTACACAGAGTTCAAGTTTCCTCAAATCAAAGCTCACCCGTGGCACAAGgtttgttaaataatcgcagg---tgcctctttggtgcgtgtgcttgttcaaatgaaat--ttaatgtagcatataactcttcag------------------------------------------------------------------------------------------------

upper sequence: PP1S306_62V6.1 (Physcomitrella patens), 5'ss of exon 8
lower sequence: AT1G57870.1 (Arabidopsis thaliana), 5'ss of exon 11
GTTTTGGGGACACCGACTCGTGAGGAGATCAAGTGCATGAATCCGAACTACACAGAGTTCAAGTTTCCACAAATCAAGGCGCACCCGTGGCACAAAgtatgttttttgtgcgaatgctatgatgtcatcctgggtgttgcggttgtagtgcggtagtggatgtgggtcagcctttctcg-tgtagcggcattgttagttgcgtgcgtcgtggtttgttggatgttgggttttgacgacggtaaccggcgtttggtatggccgatgtgggaattgcag
|||||||| ||||| ||  | ||||||||||| ||||||||||| ||||||||||| || || ||||| || || ||  | || || |||||||| ||||     | ||   | |   |   | ||| |      | | |  |  || | || ||     | ||    ||| | ||||| | ||| |   ||| | |  |  |  ||                                                                      
GTTTTGGGTACACCAACAAGGGAGGAGATCAAATGCATGAATCCAAACTACACAGAATTTAAATTTCCTCAGATAAAACCTCATCCTTGGCACAAGgtataccgctagt---agtatca-attatcacctaatagggttc--tcttaat-cgata-----tatgaccaagcttgtctcggtttagtgaggttgattgaagtatatgtg---------------------------------------------------------------------

upper sequence: PP1S306_62V6.1 (Physcomitrella patens), 5'ss of exon 8
lower sequence: AT1G06390.1 (Arabidopsis thaliana), 5'ss of exon 9
GTTTTGGGGACACCGACTCGTGAGGAGATCAAGTGCATGAATCCGAACTACACAGAGTTCAAGTTTCCACAAATCAAGGCGCACCCGTGGCACAAAgtatgttttttgtgcgaatgctatgatgtcatcctgggtgttgcggttgtagtgcg-gtagtggatgtgggtcagcctttctcgtgtagcggcattgttagttgcgtgcgtcgtggtttgttggatgttgggttttgacgacggtaaccggcgtttggtatggccgatgtgggaattgcag
||| | || || || |||||||| || ||    || ||||| |||||||||||||| || | ||| ||||||||||| || ||||| |||||||| |||  |  | |   |   || |      | | |     |  ||   |  |         |||  |  | |   |||  |||   | ||||  ||    || |   || |  | ||   |   |                                                          
GTTCTTGGTACTCCAACTCGTGAAGAAATTCGATGTATGAACCCGAACTACACAGATTTTAGGTTCCCACAAATCAAAGCTCACCCTTGGCACAAGgtagttcatctcaccttttgttcctggttaagc--aattactgaactcattacctacacagtatacattga--agcgattcatttatagcatcaaccata-tactgtac-ccttgacctccag----------------------------------------------------------

upper sequence: PP1S306_62V6.1 (Physcomitrella patens), 5'ss of exon 8
lower sequence: AT1G09840.2 (Arabidopsis thaliana), 5'ss of exon 11
GTTTTGGGGACACCGACTCGTGAGGAGATCAAGTGCATGAATCCGAACTACACAGAGTTCAAGTTTCCACAAATCAAGGCGCACCCGTGGCACAAAgtatgttttttg-tgcgaatgctatgatgtcatcctgggtgttgcggttgtagtgcggtagtggatgtgggtcagcctttctcgtgtagcggcattgttagttgcgtgcgtcgtggtttgttggatgttgggttttgacgacggtaaccggcgtttggtatggccgatgtgggaattgcag
||||| || ||||| ||  | || || ||||||||||||||||| ||||| ||||| || |||||||| || || ||  | || || |||||||| |||||  || |  ||  | || | |     |  || |  |  |        ||||   | || | ||   |      ||| ||    ||  |   || || |||                                                                             
GTTTTAGGTACACCAACAAGGGAAGAAATCAAGTGCATGAATCCAAACTATACAGAATTTAAGTTTCCGCAGATAAAACCTCATCCATGGCACAAGgtatgccttctaatgttattgat-tatcacctaccagaataatctttaatcagtggttttgttggtgaatgca---ttttttcaaagaggagttctggtatttg-----------------------------------------------------------------------------

upper sequence: PP1S306_62V6.1 (Physcomitrella patens), 5'ss of exon 8
lower sequence: Vv14s0066g01050.t01 (Vitis vinifera), 5'ss of exon 10
GTTTTGGGGACACCGACTCGTGAGGAGATCAAGTGCATGAATCCGAACTACACAGAGTTCAAGTTTCCACAAATCAAGGCGCACCCGTGGCACAAAgtatgttttttgtgcgaatgct-atgatgtcatcctgggtgttgcggttgtagtgcggtagtggatgtgggtcagcct-ttctcgtgta-gcggcattgttagttgcgtgcgtcgtggtttgttggatgttgggttttgacgacggtaaccggcgtttggtatggccgatgtgggaattgcag
||  | ||||| || ||||||||||| |||||||| |||||||| ||||| || ||||| || || |||||||||||||| ||||| |||||||| ||  | | ||  |    || |  |  || |||   |   || |||  ||| | |  | ||  | || |   | |   | ||||| |||  || |                                                                                         
GTACTTGGGACGCCAACTCGTGAGGAAATCAAGTGTATGAATCCAAACTATACTGAGTTTAAATTCCCACAAATCAAGGCTCACCCCTGGCACAAGgtgagctcttgatttctataccgaccatttcaa--taattgatgcttttggattttg-tatcgaatttatctgaaaatgttctcttgtttgcag-----------------------------------------------------------------------------------------

upper sequence: PP1S306_62V6.1 (Physcomitrella patens), 5'ss of exon 8
lower sequence: Vv15s0048g02010.t01 (Vitis vinifera), 5'ss of exon 10
GTTTTGGGGACACCGACTCGTGAGGAGATCAAGTGCATGAATCCGAACTACACAGAGTTCAAGTTTCCACAAATCAAGGCGCACCCGTGGCACAAAgtatgttttttgtgcgaatgctatgatgtcatcctgggtgttgcggttgtagtgcggtagtggatgtgggtcagcctttctcgtgtagcggcattgttagttgcgtgcgtcgtggtttgttggatgttgggttttgacgacggtaaccggcgtttggtatggccgatgtgggaattgcag
 || |||| ||||| ||  | || || || |||||||||||||| || ||||  ||||||||||||||||||||||| || ||||| |||||||| || |||      | | || |    |||   |||            | ||     |   | ||    | | | |    |  |  | ||||   |   ||| ||  ||      | ||||    |                                                         
ATTCTGGGTACACCCACCAGAGAAGAAATTAAGTGCATGAATCCAAATTACAATGAGTTCAAGTTTCCACAAATCAAAGCTCACCCATGGCACAAGgtttgtcaacaattctaaagggtagatcatatct-----------gctgcccgacatcactgatatttgataaattatatttctatagccaaaagcttatttaagtt-----ttgttttccag---------------------------------------------------------

upper sequence: PP1S306_62V6.1 (Physcomitrella patens), 5'ss of exon 8
lower sequence: Vv07s0005g02100.t01 (Vitis vinifera), 5'ss of exon 10
GTTTTGGGGACACCGACTCGTGAGGAGATCAAGTGCATGAATCCGAACTACACAGAGTTCAAGTTTCCACAAATCAAGGCGCACCCGTGGCACAAAgtatgttttttgtgcgaatgctatgatgtcatcctgggtgttgcggttgtagtgcggtagtggatgtgggtcagcctttctcgtgtagcggcattgttagttgcgtgcgtcgtggtttgttggatgttgggttttgacgacggtaaccggcgtttggtatggccgatgtgggaattgcag
|||||||| || || ||  | ||||| || |||||||||||||| || |||||||| || || || |||||||| || || ||||| |||||||| |||   |   |    | | | ||| |  |||       || |  | || |       |   | || | | |   | ||  |  |||| |  |  | | ||                                                                                
GTTTTGGGCACCCCAACAAGAGAGGAAATTAAGTGCATGAATCCCAATTACACAGAATTTAAATTCCCACAAATTAAAGCCCACCCATGGCACAAGgtac--tggatagaagcaggatattacttcaattc---tgctatgcttcttacaacctcacgaatattgattttcattcttattgtacctcc--tatcag--------------------------------------------------------------------------------

upper sequence: PP1S306_62V6.1 (Physcomitrella patens), 5'ss of exon 8
lower sequence: EDP05327 (Chlamydomonas reinhardtii), 5'ss of exon 3
GTTTTGGGGACACCGACTCGTGAGGAGATCAAGTGCATGAATCCGAACTACACAGAGTTCAAGTTTCCACAAATCAAGGCGCACCCGTGGCACAAAgtatgttttttgtgcgaatgctatgatgtcatcctgggtgttgcggttgtagtgcggtagtggatgtgggtcagcctttctcgtgtagcggcattgttagttgcgtgcgtcgtggtttgttggatgttgggttttgacgacggtaaccggcgtttggtatggccgatgtgggaattgcag
                                    ||||| || |||||||| ||||||||||| || || |||||||||||||| ||| || |||  ||||      ||| ||||      | |  | |||   | |  | |  || | |  |     ||   | | ||           ||  || | |   ||||  |   |          ||| ||||    |   | | | |  | | ||  ||  |    |||  |            
-----------------------------------AATGAACCCCAACTACACGGAGTTCAAGTTCCCCCAGATCAAGGCGCACCCCTGG-ACGAAG-GTGTTCAGCAAGCGGATGCCGCCG-GACGCCGTGGACCTGgtaggtacagcg-gccatgcagtgcacggcggctc---------agaagcttgg--ggttgtct---tttcaacacactggttgttttcctcctaag-cagccatctgccattcttccttccgcag------------

upper sequence: PP1S306_62V6.1 (Physcomitrella patens), 5'ss of exon 8
lower sequence: EFJ07923 (Selaginella moellendorffii), 5'ss of exon 10
GTTTTGGGGACACCGACTCGTGAGGAGATCAAGTGCATGAATCCGAACTACACAGAGTTCAAGTTTCCACAAATCAAGGCGCACCCGTGGCACAAAgtatgttttttgtgcgaatgctatgatgtcatcctgggtgttgcggttgtagtgcggtagtggatgtgggtcagcctttctcgtgtagcggcattgttagttgcgtgcgtcgtggtttgttggatgttgggttttgacgacggtaaccggcgtttggtatggccgatgtgggaattgcag
|| || || || || ||||| ||||| ||||| ||||||||||| |||||||| ||||| ||||| || || || || ||||| || |||||||| ||| |     |   |    | |||       ||   |    |   | ||| |  || |    |                                                                                                                     
GTCTTAGGTACTCCTACTCGGGAGGAAATCAAATGCATGAATCCAAACTACACGGAGTTTAAGTTCCCTCAGATTAAAGCGCATCCCTGGCACAAGgtaagagcaat---catccggtatatctctctctctgtctctcttgatgtggctcgttgacag---------------------------------------------------------------------------------------------------------------------

upper sequence: PP1S306_62V6.1 (Physcomitrella patens), 5'ss of exon 8
lower sequence: EFJ07216 (Selaginella moellendorffii), 5'ss of exon 10
GTTTTGGGGACACCGACTCGTGAGGAGATCAAGTGCATGAATCCGAACTACACAGAGTTCAAGTTTCCACAAATCAAGGCGCACCCGTGGCACAAAgtatgttttttgtgcgaatgctatgatgtcatcctgggtgttgcggttgtagtgcggtagtggatgtgggtcagcctttctcgtgtagcggcattgttagttgcgtgcgtcgtggtttgttggatgttgggttttgacgacggtaaccggcgtttggtatggccgatgtgggaattgcag
|| || || || || ||||| ||||| ||||| ||||||||||| |||||||| ||||| ||||| || || || || ||||| || |||||||| ||| |     |   |    | |||       ||   |    |   | ||| |  || |    |                                                                                                                     
GTCTTAGGTACTCCTACTCGCGAGGAAATCAAATGCATGAATCCAAACTACACGGAGTTTAAGTTCCCTCAGATTAAAGCGCATCCCTGGCACAAGgtaagagcaat---catccggtatatctctctctctgtctctcttgatgtggctcgttgacag---------------------------------------------------------------------------------------------------------------------

upper sequence: PP1S306_62V6.1 (Physcomitrella patens), 5'ss of exon 8
lower sequence: EFJ04915 (Selaginella moellendorffii), 5'ss of exon 9
GTTTTGGGGACACCGACTCGTGAGGAGATCAAGTGCATGAATCCGAACTACACAGAGTTCAAGTTTCCACAAATCAAGGCGCACCCGTGGCACAAAgtatgttttttgtgcgaatgctatgatgtcatcctgggtgttgcggttgtagtgcggtagtggatgtgggtcagcctttctcgtgtagcggcattgttagttgcgtgcgtcgtggtttgttggatgttgggttttgacgacggtaaccggcgtttggtatggccgatgtgggaattgcag
||| | || || || ||||| |||||||||||||| |||||||| |||||||| || |||||||| || ||||||||||| ||||| |||||||| ||  ||       || | | || || ||       ||  |||   || |||  | || ||                                                                                                                        
GTTCTTGGAACCCCTACTCGCGAGGAGATCAAGTGTATGAATCCCAACTACACGGAATTCAAGTTCCCTCAAATCAAGGCCCACCCTTGGCACAAGgtgcgt-----aggcaacttctttgttggggc---ggtcgtttacgtagtaacgtggcag------------------------------------------------------------------------------------------------------------------------

upper sequence: PP1S306_62V6.1 (Physcomitrella patens), 5'ss of exon 8
lower sequence: EFJ10962 (Selaginella moellendorffii), 5'ss of exon 9
GTTTTGGGGACACCGACTCGTGAGGAGATCAAGTGCATGAATCCGAACTACACAGAGTTCAAGTTTCCACAAATCAAGGCGCACCCGTGGCACAAAgtatgttttttgtgcgaatgctatgatgtcatcctgggtgttgcggttgtagtgcggtagtggatgtgggtcagcctttctcgtgtagcggcattgttagttgcgtgcgtcgtggtttgttggatgttgggttttgacgacggtaaccggcgtttggtatggccgatgtgggaattgcag
||| | || || || ||||| |||||||||||||| |||||||| |||||||| || |||||||| || ||||||||||| || || |||||||| ||  ||       || | | || || ||       ||  |||   || |||  | || ||                                                                                                                        
GTTCTTGGAACCCCTACTCGCGAGGAGATCAAGTGTATGAATCCCAACTACACGGAATTCAAGTTCCCTCAAATCAAGGCCCATCCTTGGCACAAGgtgcgt-----aggcaacttctttgttggggc---ggtcgtttacgtagtaacgtggcag------------------------------------------------------------------------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100389546|gb|BY989024.1|BY989024
EST:     ACTACACAGAGTTCAAGTTTCCACAAATCAAGGCGCACCCGTGGCACAAA                         GTTTTCCACAAACGCATGCCACCTGAAGCAGTTGACTTGGTGTCAAGGCTC
genomic: ACTACACAGAGTTCAAGTTTCCACAAATCAAGGCGCACCCGTGGCACAAAgtatgttttt ... ggaattgcagGTTTTCCACAAACGCATGCCACCTGAAGCAGTTGACTTGGTGTCAAGGCTC
EST: gi|37823641|gb|BJ581707.1|BJ581707
EST:     ACTACACAGAGTTCAAGTTTCCACAAATCAAGGCGCACCCGTGGCACAAA                         GTTTTCCACAAACGCATGCCACCTGAAGCAGTTGACTTGGTGTCAAGGCTC
genomic: ACTACACAGAGTTCAAGTTTCCACAAATCAAGGCGCACCCGTGGCACAAAgtatgttttt ... ggaattgcagGTTTTCCACAAACGCATGCCACCTGAAGCAGTTGACTTGGTGTCAAGGCTC
EST: gi|100449000|gb|CJ973299.1|CJ973299
EST:     ACTACACAGAGTTCAAGTTTCCACAAATCAAGGCGCACCCGTGGCACAAA                         GTTTTCCACAAACGCATGCCACCTGAAGCAGTTGACTTGGTGTCAAGGCTC
genomic: ACTACACAGAGTTCAAGTTTCCACAAATCAAGGCGCACCCGTGGCACAAAgtatgttttt ... ggaattgcagGTTTTCCACAAACGCATGCCACCTGAAGCAGTTGACTTGGTGTCAAGGCTC
EST: gi|18338380|gb|BJ170404.1|BJ170404
EST:     ACTACACAGAGTTCAAGTTTCCACAAATCAAGGCGCACCCGTGGCACAAA                         GTTTTCCACAAACGCATGCCACCTGAAGCAGTTGACTTGGTGTCAAGGCTC
genomic: ACTACACAGAGTTCAAGTTTCCACAAATCAAGGCGCACCCGTGGCACAAAgtatgttttt ... ggaattgcagGTTTTCCACAAACGCATGCCACCTGAAGCAGTTGACTTGGTGTCAAGGCTC