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TCGAGACCCTAGCTCGAAGTCAATTCTTGAAGATCCCATGATAATTTTACAGAAGGGTTACTCTGTGACACTCTTCTTGGCTGTGCTAGCTTTCGGTGGAgtaagtatttggagaatgtcagacttgtattgtataaatttgtggttgtttattacgcttattaagcttcttgtcatagcattgaaaccaactgaatcta...
species | Physcomitrella patens |
transcript | PP1S28_200V6.1 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: AGAAGGGTTACTCTGTGACACTCTTCTTGGCTGTGCTAGCTTTCGGTGGA TCAACAAGATGGCTTCTATACACTGAACAGGCGCCTTCGGCTTGGTTTCATEST: gi|162255699|gb|FC432113.1|FC432113
genomic: AGAAGGGTTACTCTGTGACACTCTTCTTGGCTGTGCTAGCTTTCGGTGGAgtaagtattt ... ttccttgcagTCAACAAGATGGCTTCTATACACTGAACAGGCGCCTTCGGCTTGGTTTCAT
EST: AGAAGGGTTACTCTGTGACACTCTTCTTGGCTGTGCTAGCTTTCGGTGGA TCAACAAGATGGCTTCTATACACTGAACAGGCGCCTTCGGCTTGGTTTCATEST: gi|162164625|gb|FC341920.1|FC341920
genomic: AGAAGGGTTACTCTGTGACACTCTTCTTGGCTGTGCTAGCTTTCGGTGGAgtaagtattt ... ttccttgcagTCAACAAGATGGCTTCTATACACTGAACAGGCGCCTTCGGCTTGGTTTCAT
EST: AGAAGGGTTACTCTGTGACACTCTTCTTGGCTGTGCTAGCTTTCGGTGGA TCAACAAGATGGCTTCTATACACTGAACAGGCGCCTTCGGCTTGGTTTCATEST: gi|100387951|gb|BY970696.1|BY970696
genomic: AGAAGGGTTACTCTGTGACACTCTTCTTGGCTGTGCTAGCTTTCGGTGGAgtaagtattt ... ttccttgcagTCAACAAGATGGCTTCTATACACTGAACAGGCGCCTTCGGCTTGGTTTCAT
EST: AGAAGGGTTACTCTGTGACACTCTTCTTGGCTGTGCTAGCTTTCGGTGGA TCAACAAGATGGCTTCTATACACTGAACAGGCGCCTTCGGCTTGGTTTCAT
genomic: AGAAGGGTTACTCTGTGACACTCTTCTTGGCTGTGCTAGCTTTCGGTGGAgtaagtattt ... ttccttgcagTCAACAAGATGGCTTCTATACACTGAACAGGCGCCTTCGGCTTGGTTTCAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCGAGACCCTAGCTCGAAGTCAATTCTTGAAGATCCCATGATAATTTTACAGAAGGGTTACTCTGTGACACTCTTCTTGGCTGTGCTAGCTTTCGGTGGAgtaagtatttggagaatgtcagacttgtattgtataaatttgtggttgtttattacgcttattaagcttcttgtcatagcattgaaaccaactgaatcta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA