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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTATGTGTGTCTGGGATCCCCGGAAAAGGCCGACGGCAGCACAAGCATTGCAACATCCATTTTTTCAGgtgcattaatacgtcgacttgtgtaccagttgatgccgtaccttaatagtttttcgttgtccgaatttctgatgtgtggttgttagatatgctatattca...

Basic information

species Physcomitrella patens
transcript PP1S28_184V6.2
intron # 9
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100452665|gb|CJ975383.1|CJ975383
EST:     CCCGGAAAAGGCCGACGGCAGCACAAGCATTGCAACATCCATTTTTTCAG                         GTTTATAATCGTATTCCACTACCTATTTCAGGATACGAGTTTGTGCAGCCG
genomic: CCCGGAAAAGGCCGACGGCAGCACAAGCATTGCAACATCCATTTTTTCAGgtgcattaat ... cattttgcagGTTTATAATCGTATTCCACTACCTATTTCAGGATACGAGTTTGTGCAGCCG
EST: gi|208398246|gb|DC912287.1|DC912287
EST:     CCCGGAAAAGGCCGACGGCAGCACAAGCATTGCAACATCCATTTTTTCAG                         GTTTATAATCGTATTCCACTACCTATTTCAGGATACGAGTTTGTGCAGCCG
genomic: CCCGGAAAAGGCCGACGGCAGCACAAGCATTGCAACATCCATTTTTTCAGgtgcattaat ... cattttgcagGTTTATAATCGTATTCCACTACCTATTTCAGGATACGAGTTTGTGCAGCCG
EST: gi|100445020|gb|BY964319.1|BY964319
EST:     CCCGGAAAAGGCCGACGGCAGCACAAGCATTGCAACATCCATTTTTTCAG                         GTTTATAATCGTATTCCACTACCTATTTCAGGATACGAGTTTGTGCAGCCG
genomic: CCCGGAAAAGGCCGACGGCAGCACAAGCATTGCAACATCCATTTTTTCAGgtgcattaat ... cattttgcagGTTTATAATCGTATTCCACTACCTATTTCAGGATACGAGTTTGTGCAGCCG
EST: gi|100434800|gb|BY960838.1|BY960838
EST:     CCCGGAAAAGGCCGACGGCAGCACAAGCATTGCAACATCCATTTTTTCAG                         GTTTATAATCGTATTCCACTACCTATTTCAGGATACGAGTTTGTGCAGCCG
genomic: CCCGGAAAAGGCCGACGGCAGCACAAGCATTGCAACATCCATTTTTTCAGgtgcattaat ... cattttgcagGTTTATAATCGTATTCCACTACCTATTTCAGGATACGAGTTTGTGCAGCCG