1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GAACCGGTAGGTGGTGCACACTCTGATCCAGTGCAGACTTCCCTTAACATCAAGACGGCTATCATGAAGCACATGAAGgtaagtgaatggatgatagtaatcaatttggaaagctatctattcccatctttttctttctattaatggttttatatccttactggtcaaggtgtagtgc...
species | Physcomitrella patens |
transcript | PP1S234_46V6.1 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: CAGTGCAGACTTCCCTTAACATCAAGACGGCTATCATGAAGCACATGAAG GAATTGATGAAAATGGATCCTGAGACACTCCTGCAAGACAGAGCAGCCAAGEST: gi|208350907|gb|DC925954.1|DC925954
genomic: CAGTGCAGACTTCCCTTAACATCAAGACGGCTATCATGAAGCACATGAAGgtaagtgaat ... catccaacagGAATTGATGAAAATGGATCCTGAGACACTCCTGCAAGACAGAGCAGCCAAG
EST: AGTGCAGACTT-CCTTAACATCAAGACGGCTATCATGAAGCACATGAAG GAATTGATGAAAATGGATCCTGAGACACTCCTGCAAGACAGAGCAGCCAAGEST: gi|67697999|gb|BJ958232.1|BJ958232
genomic: AGTGCAGACTTCCCTTAACATCAAGACGGCTATCATGAAGCACATGAAGgtaagtgaat ... catccaacagGAATTGATGAAAATGGATCCTGAGACACTCCTGCAAGACAGAGCAGCCAAG
EST: AGTGCAGACTTCCNTTAACATCAAGACGGCTATCATGNAGCACATGAAG GAATTGATGAAAATGGATCCTGAGACACTCCTGCAAGACAGAGCAGCCAAGEST: gi|208368834|gb|DC951358.1|DC951358
genomic: AGTGCAGACTTCCCTTAACATCAAGACGGCTATCATGAAGCACATGAAGgtaagtgaat ... catccaacagGAATTGATGAAAATGGATCCTGAGACACTCCTGCAAGACAGAGCAGCCAAG
EST: CAGTGCAGACTTCCCTTAACATCAAGACGGCTATCATGAAGCACATGAAG GAATTGATGAAAATGGATCCTGAGACACTCCTGCAAGACAGAGCAGCCAAGEST: gi|67574582|gb|BJ947406.1|BJ947406
genomic: CAGTGCAGACTTCCCTTAACATCAAGACGGCTATCATGAAGCACATGAAGgtaagtgaat ... catccaacagGAATTGATGAAAATGGATCCTGAGACACTCCTGCAAGACAGAGCAGCCAAG
EST: CAGTGCAGACTTCCCTTAACATCAAGACGGCTATCATGAAGCACATGAAG GAATTGATGAAAATGGATCCTGAGACACTCCTGCAAGACAGAGCAGCCAAGEST: gi|67507684|gb|BJ940564.1|BJ940564
genomic: CAGTGCAGACTTCCCTTAACATCAAGACGGCTATCATGAAGCACATGAAGgtaagtgaat ... catccaacagGAATTGATGAAAATGGATCCTGAGACACTCCTGCAAGACAGAGCAGCCAAG
EST: CAGTGCAGACTTCCCTTAACATCAAGACGGCTATCATGAAGCACATGAAG GAATTGATGAAAATGGATCCTGAGACACTCCTGCAAGACAGAGCAGCCAAGEST: gi|67727146|gb|BJ977405.1|BJ977405
genomic: CAGTGCAGACTTCCCTTAACATCAAGACGGCTATCATGAAGCACATGAAGgtaagtgaat ... catccaacagGAATTGATGAAAATGGATCCTGAGACACTCCTGCAAGACAGAGCAGCCAAG
EST: CAGTGCAGACTTCCCTTAACATCAAGACGGCTATCATGAAGCACATGAAG GAATTGATGAAAATGGATCCTGAGACACTCCTGCAAGACAGAGCAGCCAAG
genomic: CAGTGCAGACTTCCCTTAACATCAAGACGGCTATCATGAAGCACATGAAGgtaagtgaat ... catccaacagGAATTGATGAAAATGGATCCTGAGACACTCCTGCAAGACAGAGCAGCCAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAACCGGTAGGTGGTGCACACTCTGATCCAGTGCAGACTTCCCTTAACATCAAGACGGCTATCATGAAGCACATGAAGgtaagtgaatggatgatagtaatcaatttggaaagctatctattcccatctttttctttctattaatggttttatatccttactggtcaaggtgtagtgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC