1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' |
ATTGCCGCACTTGCCAGTTCTCTCCGGACACTTGCAGACATGAAAGAGCCCATCGGGGAAGTGTTGAAGCGCACGGAGgtaaggagaatgctaatgggaaacaacttaacattgctaggagggatattctggaacttctcttctcatctaaaaagctttattcttcatttgcaagaaa...
species | Physcomitrella patens |
transcript | PP1S22_40V6.2 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: CACTTGCAGACATGAAAGAGCCCATCGGGGAAGTGTTGAAGCGCACGGAG GTTGCTGAAGGACTTACTCTGGAGAAGACATCTTGTCCTTTAGGAGTTGTTEST: gi|162257460|gb|FC433321.1|FC433321
genomic: CACTTGCAGACATGAAAGAGCCCATCGGGGAAGTGTTGAAGCGCACGGAGgtaaggagaa ... tgcaaaatagGTTGCTGAAGGACTTACTCTGGAGAAGACATCTTGTCCTTTAGGAGTTGTT
EST: CACTTGCAGACATGAAAGAGCCCATCGGGGAAGTGTTGAAGCGCACGGAG GTTGCTGAAGGACTTACTCTGGAGAAGACATCTTGTCCTTTAGGAGTTGTTEST: gi|162276248|gb|FC452602.1|FC452602
genomic: CACTTGCAGACATGAAAGAGCCCATCGGGGAAGTGTTGAAGCGCACGGAGgtaaggagaa ... tgcaaaatagGTTGCTGAAGGACTTACTCTGGAGAAGACATCTTGTCCTTTAGGAGTTGTT
EST: CACTTGCAGACATGAAAGAGCCCATCGGGGAAGTGTTGAAGCGCACGGAG GTTGCTGAAGGACTTACTCTGGAGAAGACATCTTGTCCTTTAGGAGTTGTTEST: gi|162210539|gb|FC386835.1|FC386835
genomic: CACTTGCAGACATGAAAGAGCCCATCGGGGAAGTGTTGAAGCGCACGGAGgtaaggagaa ... tgcaaaatagGTTGCTGAAGGACTTACTCTGGAGAAGACATCTTGTCCTTTAGGAGTTGTT
EST: CACTTGCAGACATGAAAGAGCCCATCGGGGAAGTGTTGAAGCGCACGGAG GTTGCTGAAGGACTTACTCTGGAGAAGACATCTTGTCCTTTAGGAGTTGTTEST: gi|162167791|gb|FC344521.1|FC344521
genomic: CACTTGCAGACATGAAAGAGCCCATCGGGGAAGTGTTGAAGCGCACGGAGgtaaggagaa ... tgcaaaatagGTTGCTGAAGGACTTACTCTGGAGAAGACATCTTGTCCTTTAGGAGTTGTT
EST: CACTTGCAGACATGAAAGAGCCCATCGGGGAAGTGTTGAAGCGCACGGAG GTTGCTGAAGGACTTACTCTGGAGAAGACATCTTGTCCTTTAGGAGTTGTTEST: gi|162153153|gb|FC329559.1|FC329559
genomic: CACTTGCAGACATGAAAGAGCCCATCGGGGAAGTGTTGAAGCGCACGGAGgtaaggagaa ... tgcaaaatagGTTGCTGAAGGACTTACTCTGGAGAAGACATCTTGTCCTTTAGGAGTTGTT
EST: CACTTGCAGACATGAAAGAGCCCATCGGGGAAGTGTTGAAGCGCACGGAG GTTGCTGAAGGACTTACTCTGGAGAAGACATCTTGTCCTTTANGAGTTGTT
genomic: CACTTGCAGACATGAAAGAGCCCATCGGGGAAGTGTTGAAGCGCACGGAGgtaaggagaa ... tgcaaaatagGTTGCTGAAGGACTTACTCTGGAGAAGACATCTTGTCCTTTAGGAGTTGTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATTGCCGCACTTGCCAGTTCTCTCCGGACACTTGCAGACATGAAAGAGCCCATCGGGGAAGTGTTGAAGCGCACGGAGgtaaggagaatgctaatgggaaacaacttaacattgctaggagggatattctggaacttctcttctcatctaaaaagctttattcttcatttgcaagaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC