Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTAGTAGGCACTCCAAATTACATGTGTCCAGAGCTACTTGCAGACATCCCATATGGATTCAAATCAGACATTTGGTCATTAGgtagtcagcttatttctctcttcactttctgttgagacaagtcctggacttactgctggtagccctcacctggtttctgatcgtgacatcttgttgtctgcag

Basic information

species Physcomitrella patens
transcript PP1S22_216V6.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S22_216V6.1 (Physcomitrella patens), 5'ss of exon 9
lower sequence: LOC_Os01g64490.1 (Oryza sativa), 5'ss of exon 10
GTAGTAGGCACTCCAAATTACATGTGTCCAGAGCTACTTGCAGACATCCCATATGGATTCAAATCAGACATTTGGTCATTAGgtagtcagcttatttctctcttcactttctgttgagacaagtcctggacttactgctggtagccctcacctggtttctgatcgtgacatcttgttgtctgcag
|| || || || |||||||||||||| |||||||| ||||||||||| || || |||||||| |||||||| |||||  | |||| |    ||   |  ||| |     | |||| | |   ||      || |||| |        | ||                                  
GTTGTGGGAACACCAAATTACATGTGCCCAGAGCTGCTTGCAGACATTCCTTACGGATTCAAGTCAGACATATGGTCTCTTGgtaata---ttcccttgctcatatggatatgtttaaatgtgtgaatttctaactgatatagatatttacag--------------------------------

upper sequence: PP1S22_216V6.1 (Physcomitrella patens), 5'ss of exon 9
lower sequence: LOC_Os05g36960.1 (Oryza sativa), 5'ss of exon 9
GTAGTAGGCACTCCAAATTACATGTGTCCAGAGCTACTTGCAGACATCCCATATGGATTCAAATCAGACATTTGGTCATTAGgtagtcagcttatttctctcttcactttctgttgagacaagtcctggacttactgc-tggtagccctcacctggtttctgatcgtgacatcttgttgtctgcag
|| || || || || |||||||||||||||||||| ||  |||| ||||| ||||||||||| |||||||| |||||  | ||||     ||| ||||||        ||||      |||||| |     ||||||| |  |   | | |  |   ||  | |    | ||              
GTTGTTGGAACACCGAATTACATGTGTCCAGAGCTTCTCACAGATATCCCTTATGGATTCAAGTCAGACATCTGGTCTCTTGgtaactgcctt-tttctcctcaggtcttct------acaagttcata--ttactgcatatttatcttaatttaagttacgctttctatatag------------

upper sequence: PP1S22_216V6.1 (Physcomitrella patens), 5'ss of exon 9
lower sequence: GRMZM2G137118_T02 (Zea mays), 5'ss of exon 10
GTAGTAGGCACTCCAAATTACATGTGTCCAGAGCTACTTGCAGACATCCCATATGGATTCAAATCAGACATTTGGTCATTAGgtagtcagcttatttctctcttcactttctgttgagacaagtcctggacttactgctggtagccctcacctggtttctgatcgtgacatcttgttgtctgcag--
|| || || || |||||||||||||| |||||||| || || || || || ||||| ||||| |||||||| |||||  | |||| |  | ||  | |    |||| ||  |   |  |   |   ||     |   |||||             || ||||   | |||| || |  | |||    
GTGGTCGGGACACCAAATTACATGTGCCCAGAGCTGCTAGCTGATATTCCCTATGGTTTCAAGTCAGACATCTGGTCTCTCGgtattacgttt--tacctggttcaattctttcagtaatgtgagatgtttacataactggtgatttattataaattcctgact-taacatgttttcatttgcttag

upper sequence: PP1S22_216V6.1 (Physcomitrella patens), 5'ss of exon 9
lower sequence: GRMZM2G074262_T01 (Zea mays), 5'ss of exon 10
GTAGTAGGCACTCCAAATTACATGTGTCCAGAGCTACTTGCAGACATCCCATATGGATTCAAATCAGACATTTGGTCATTAGgtagtcagcttatttctctcttcactttctgttgagacaagtcctggacttactgctggtagccctcacctggtttctgatcgtgacatcttgttgtctgcag
|| || || || |||||||| ||||| |||||| | ||| ||||||| || ||||||||||| ||||| || |||||  | |||| | || || || |     | |     || | | | |  |        || |    |   |  | | ||||| |||  | |                    
GTTGTGGGAACACCAAATTATATGTGCCCAGAGTTGCTTACAGACATTCCCTATGGATTCAAGTCAGATATATGGTCTCTTGgtaat-agtttcttacata--taaagagatgcttaaatatattaa-----tattagatgcctcttttaactggtgtct--ttgcag-----------------

upper sequence: PP1S22_216V6.1 (Physcomitrella patens), 5'ss of exon 9
lower sequence: GLYMA12G09910.1 (Glycine max), 5'ss of exon 9
GTAGTAGGCACTCCAAATTACATGTGTCCAGAGCTACTTGCAGACATCCCATATGGATTCAAATCAGACATTTGGTCATTAGgtagtcagcttatttctctcttcactttctgttgagacaagtcctggacttactgctggtagccctcacctggtttctgatcgtgacatcttgttgtctgcag
|| ||||| ||||| ||||||||||| || || || ||||| || || ||||||||||||||||| || ||||||||| ||||||   |  ||||  |       | | |||  |      ||   |||  || |||| | ||      |  |   || |  ||                     
GTGGTAGGAACTCCTAATTACATGTGCCCTGAACTGCTTGCTGATATTCCATATGGATTCAAATCTGATATTTGGTCACTAGgtatgtatgttataacca-----agtatctaatacttgcagatttggttttgctgcagctaaaatgaattttacttgt--tcag-------------------

upper sequence: PP1S22_216V6.1 (Physcomitrella patens), 5'ss of exon 9
lower sequence: GLYMA11G18340.1 (Glycine max), 5'ss of exon 9
GTAGTAGGCACTCCAAATTACATGTGTCCAGAGCTACTTGCAGACATCCCATATGGATTCAAATCAGACATTTGGTCATTAGgtagtcagcttatttctctcttcactttctgttgagacaagtcctggacttactgctggtagccctcacctggtttctgatcgtgacatcttgttgtctgcag
|| ||||| ||||| |||||||||||||| || || ||||| || || || |||||||||||||| || ||||||||| | ||||       ||||         | | |||| |||    |    |||  || |||| | ||    | |  |  ||  || ||                     
GTGGTAGGAACTCCTAATTACATGTGTCCTGAACTGCTTGCTGATATTCCGTATGGATTCAAATCTGATATTTGGTCACTCGgta-----tatattctaaaaccaagtatctgatgattgcacatttggctttgctgcagctaaaattaattt--ttcttgttcag-------------------

upper sequence: PP1S22_216V6.1 (Physcomitrella patens), 5'ss of exon 9
lower sequence: GLYMA12G31330.1 (Glycine max), 5'ss of exon 9
GTAGTAGGCACTCCAAATTACATGTGTCCAGAGCTACTTGCAGACATCCCATATGGATTCAAATCAGACATTTGGTCATTAGgtagtcagcttatttctctcttcactttctgttgagacaagtcctggacttactgctggtagccctcacctggtttctgatcgtgacatcttgttgtctgcag
|| ||||| ||||| || || |||||||| || || |||||||| || || |||||||||||||| || ||||||||| ||||||       ||| |||      |     |  ||| |   ||  ||    ||| |||   || | |    |   ||| |                        
GTGGTAGGAACTCCCAACTATATGTGTCCTGAACTTCTTGCAGATATTCCTTATGGATTCAAATCTGATATTTGGTCACTAGgta-------tatgtcttaggcgatgaatttctgatattcgttttg---ctaccgctaaaaggcattttttttgttcag------------------------

upper sequence: PP1S22_216V6.1 (Physcomitrella patens), 5'ss of exon 9
lower sequence: GLYMA13G38980.1 (Glycine max), 5'ss of exon 9
GTAGTAGGCACTCCAAATTACATGTGTCCAGAGCTACTTGCAGACATCCCATATGGATTCAAATCAGACATTTGGTCATTAGgtagtcagcttat---ttctctcttcactttctgttgagacaagtcctggacttactgctggtagccctcacctggtttctgatcgtgacatcttgttgtctgcag
|| ||||| ||||| || || |||||||| || || ||||| || || || |||||||||||||| || ||||||||| ||||||     |||||    |   | |    |   ||||  |  | | |    |  || |  || |   |                                       
GTGGTAGGAACTCCCAACTATATGTGTCCTGAACTGCTTGCTGATATTCCTTATGGATTCAAATCTGATATTTGGTCACTAGgtatatgtcttatgcgatgaatatctgatagttgttctgctatggctaaaatgtatttttgttgttcag-------------------------------------

upper sequence: PP1S22_216V6.1 (Physcomitrella patens), 5'ss of exon 9
lower sequence: Vv06s0009g00690.t01 (Vitis vinifera), 5'ss of exon 9
GTAGTAGGCACTCCAAATTACATGTGTCCAGAGCTACTTGCAGACATCCCATATGGATTCAAATCAGACATTTGGTCATTAGgtagtcagcttatttctctcttcactttctgttgagacaagtcctggacttactgctg---gtagccctcacctg-gtttctgatcgtgacatcttgttgtctgcag
||||| || ||||| |||||||||||||| || || |||||||| || || ||||| |||||||| || || |||||  ||||||         | | | |    | | |||| ||| |    |  ||||  | | | ||   || ||       ||  || ||||||                     
GTAGTTGGAACTCCCAATTACATGTGTCCTGAACTTCTTGCAGATATTCCTTATGGCTTCAAATCTGATATCTGGTCTCTAGgta---------tgtgttttcatagtgtctggtgatat---ttatggatctgcagttgtttgtggctaaattttgcattgctgatcag-------------------

upper sequence: PP1S22_216V6.1 (Physcomitrella patens), 5'ss of exon 9
lower sequence: EFJ20709 (Selaginella moellendorffii), 5'ss of exon 9
GTAGTAGGCACTCCAAATTACATGTGTCCAGAGCTACTTGCAGACATCCCATATGGATTCAAATCAGACATTTGGTCATTAGgtagtcagcttatttctctcttcactttctgttgagacaagtcctggacttactgc-tggtagccctcacctggtttctgatcgtgacatcttgttgtctgcag
|| || || || |||||||| ||||| || || || ||||| |||||||||||||| ||||||||||| || ||||| |||||||  | | | ||   ||    |   |    ||||      || ||  |||      || |||                                         
GTGGTTGGGACCCCAAATTATATGTGCCCGGAACTTCTTGCCGACATCCCATATGGCTTCAAATCAGATATATGGTCGTTAGgtatgctgatgatggttccaagcttgtcgcattgattt---tcttgatcttttgaaatgctag-----------------------------------------