Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATATCTCGCTTGGGGTGGCCATCGGTTCTTCCACTCAGATCTCCATGTTTGTGgtaagttgcatcaagcctttcatgttatatactaagctcttggcataatatttttttacttctgcaagcagaggcttattaacctgatgcaatgcttttgtccag

Basic information

species Physcomitrella patens
transcript PP1S21_141V6.2
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S21_141V6.2 (Physcomitrella patens), 5'ss of exon 9
lower sequence: GRMZM2G010779_T01 (Zea mays), 5'ss of exon 10
GATATCTCGCTTGGGGTGGCCATCGGTTCTTCCACTCAGATCTCCATGTTTGTGgtaagtt--gcatcaagcctttcatgtt-atat-actaagctcttggca---taatatttttttacttctgcaagcagaggcttattaacctgatgcaatgcttttgtccag--
||  | |||||||| || |||||||| ||||| || ||||| |||||||||||||| ||||     |  | || | |   || || | | | | ||    | |   | || | || ||       ||   |  ||| ||   |         ||  |||| |||    
GACCTTTCGCTTGGAGTCGCCATCGGGTCTTCGACGCAGATATCCATGTTTGTGgtgagttcgttcttcaaccgtgcgcattcatctgaatcatctacaagtagattgatctgttcttcacctgtcattgaagggcctacctaatcatcttgatttttttttccttag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37827722|gb|BJ585734.1|BJ585734
EST:     CCATGTTTGTG                         ATTCCATTTTGTGTAGTGATCGGGTGNCCTATGAGAACGCATATGGACCTC
genomic: CCATGTTTGTGgtaagttgca ... ttttgtccagATTCCATTTTGTGTAGTGATCGGGTGGCCTATGAGAACGCATATGGACCTC
EST: gi|100420664|gb|BY993453.1|BY993453
EST:     CTCGCTTGGGGTGGCCATCGGTTCTTCCACTCAGATCTCCCATGTT-GTG                         ATTCCATTTTGTGTAGTGATCGGGTGGGCTATGAGAACGCATATGGACCT
genomic: CTCGCTTGGGGTGGCCATCGGTTCTTCCACTCAGATCTCC-ATGTTTGTGgtaagttgca ... ttttgtccagATTCCATTTTGTGTAGTGATCGGGTGGCCTATGAGAACGCATATGGACCT