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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTCTAGTGGCAGCCGAGAAGCTCAAAAGCTCATTTTTGGAAACACTAACTTTGGTGACCTTCGGGTATACTTGTCTGGATTCTTTGACACGACTATTGGgtatgttcaaccttggaactttagcaacagctctcccttgggtgccttctgattcctgttcattggctgatgtgtggtttcgtttttcgttttcctccca...

Basic information

species Physcomitrella patens
transcript PP1S1_661V6.3
intron # 9
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162194365|gb|FC371083.1|FC371083
EST:     TTTGGTGACCTTCGGGTATACTTGTCTGGATTCTTTGACACGACTATTGG                         ACACAAGAGAGAGGCAAGAAGCTACAAAGAAATTTTCCTTACACTTGGAGT
genomic: TTTGGTGACCTTCGGGTATACTTGTCTGGATTCTTTGACACGACTATTGGgtatgttcaa ... tatttcgcagACACAAGAGAGAGGCAAGAAGCTACAAAGAAATTTTCCTTACACTTGGAGT
EST: gi|208371941|gb|DC948344.1|DC948344
EST:     TTTGGTGACCTTCGGGTATACTTGTCTGGATTCTTTGACACGACTATTGG                         ACACAAGAGAGAGGCAAGAAGCTACAAAGAAATTTTCCTTACACTTGGAGT
genomic: TTTGGTGACCTTCGGGTATACTTGTCTGGATTCTTTGACACGACTATTGGgtatgttcaa ... tatttcgcagACACAAGAGAGAGGCAAGAAGCTACAAAGAAATTTTCCTTACACTTGGAGT
EST: gi|37845748|gb|BJ603756.1|BJ603756
EST:     TTTGGTGACCTTCGGGTATACTTGTCTGGATTCTTTGACACGACTATTGG                         ACACAAGAGAGAGGCAAGAAGCTACAAAGAAATTTTCCTTACACTTGGAGT
genomic: TTTGGTGACCTTCGGGTATACTTGTCTGGATTCTTTGACACGACTATTGGgtatgttcaa ... tatttcgcagACACAAGAGAGAGGCAAGAAGCTACAAAGAAATTTTCCTTACACTTGGAGT
EST: gi|162173772|gb|FC349948.1|FC349948
EST:     TTTGGTGACCTTCGGGTATACTTGTCTGGATTCTTTGACACGACTATTGG                         ACACAAGAGAGAGGCAAGAAGCTACAAAGAAATTTTCCTTACACTTGGAGT
genomic: TTTGGTGACCTTCGGGTATACTTGTCTGGATTCTTTGACACGACTATTGGgtatgttcaa ... tatttcgcagACACAAGAGAGAGGCAAGAAGCTACAAAGAAATTTTCCTTACACTTGGAGT
EST: gi|208396876|gb|DC920444.1|DC920444
EST:     TTTGGTGACCTTCGGGTATACTTGTCTGGATTCTTTGACACGACTATTGG                         ACACAAGAGAGAGGCAAGAAGCTACAAAGAAATTTTCCTTACACTTGGAGT
genomic: TTTGGTGACCTTCGGGTATACTTGTCTGGATTCTTTGACACGACTATTGGgtatgttcaa ... tatttcgcagACACAAGAGAGAGGCAAGAAGCTACAAAGAAATTTTCCTTACACTTGGAGT