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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTCGGAAGTTGGACGACTCAGAATTCCGCAACCCATTTTCTCGTTCTTTCATTCGGgtgagtggtctatctttttatacatactgtgttcacgagggtggattttcctcagaccgcatgctatgtagtggtgttcattttgcactattgactccagttctccacag

Basic information

species Physcomitrella patens
transcript PP1S173_12V6.2
intron # 9
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|67698067|gb|BJ958300.1|BJ958300
EST:     TCTTTCATTCGG                         GTGAAAGAAGATAAAGGTTACGGATCTCGAAGGAGCGTCACTCGAAGCCGT
genomic: TCTTTCATTCGGgtgagtggtc ... ttctccacagGTGAAAGAAGATAAAGGTTACGGATCTCGAAGGAGCGTCACTCGAAGCCGT
EST: gi|208353229|gb|DC926154.1|DC926154
EST:     GACTCAGAATTCCGCAACCCATTTTCTCGTTCTTTCATTCGG                         GTGAAAGAAGATAAAGGTTACGGATCTCGAAGGAGCGTCACTCGAAGCCGT
genomic: GACTCAGAATTCCGCAACCCATTTTCTCGTTCTTTCATTCGGgtgagtggtc ... ttctccacagGTGAAAGAAGATAAAGGTTACGGATCTCGAAGGAGCGTCACTCGAAGCCGT
EST: gi|37846921|gb|BJ604929.1|BJ604929
EST:     AGTTGGACGACTCAGAATTCCGCAACCCATTTTCTCGTTCCTTCATTCGG                         GTGAAAGAAGATAAAGGTTACGGATCTCGAAGGAGCGTCACTCGAAGCCGT
genomic: AGTTGGACGACTCAGAATTCCGCAACCCATTTTCTCGTTCTTTCATTCGGgtgagtggtc ... ttctccacagGTGAAAGAAGATAAAGGTTACGGATCTCGAAGGAGCGTCACTCGAAGCCGT