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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTACCAATGACCCGACTACGAAAGAGAGTGGCCACACGGTTGAAAGATTCTCAGAACACTTTTGCATTGTTGACCACCTTCAACGAGATTGACATgtaagattgagtgtctaacccgaatttgcgagatgtgtacccttacagtgtctaattatattaaaactatgatgattttatgtcggtgttaggtagcttt...

Basic information

species Physcomitrella patens
transcript PP1S154_6V6.2
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S154_6V6.1 (Physcomitrella patens), 5'ss of exon 9
lower sequence: AT5G55070.1 (Arabidopsis thaliana), 5'ss of exon 11
GTACCAATGACCCGACTACGAAAGAGAGTGGCCACACGGTTGAAAGATTCTCAGAACACTTTTGCATTGTTGACCACCTTCAACGAGATTGACATgtaagattgagtgtctaacccgaatttgcgagatgtgtacccttacagtgtctaattatattaaaactatgatgattttatgtcgg-tgttaggtagcttt------------------------
|| || |||||  |||| || ||  | ||||| ||  |||||||||| ||||||||||||||||| ||| |||| || ||||| ||  |||| |||| || |  |||    ||||| |  |||    || |||  | |||   | |  || |    | |   |    | ||||||   |   | ||| ||                              
GTTCCTATGACAAGACTTCGCAAACGGGTGGCAACTAGGTTGAAAGACTCTCAGAACACTTTTGCGTTGCTGACAACTTTCAATGAAGTTGATATgtgagttacagttgacaaccccatgttg----atatgtctctttatcattttgaaatgcccttag--tgcactaattttaacccaactcttaagttcaccaacaaaactttccttcttcacgtag

upper sequence: PP1S154_6V6.1 (Physcomitrella patens), 5'ss of exon 9
lower sequence: Vv10s0116g01480.t01 (Vitis vinifera), 5'ss of exon 12
GTACCAATGACCCGACTACGAAAGAGAGTGGCCACACGGTTGAAAGATTCTCAGAACACTTTTGCATTGTTGACCACCTTCAACGAGATTGACATgtaagattgagtgtc-taacccgaatttgcgagatgtgtacccttacagtgtctaattatattaaaactatgatg-attttatgtcggtgttaggtagcttt-
|| || |||||  || || | ||  | || || ||||| |||||||||||||| |||||||||||| || ||||||| ||||| ||  |||| ||||||| |||  |||   |    |||||     ||| | ||  |    | | ||| ||| | ||       | ||| |  |    |   | ||||  |  |   
GTTCCTATGACAAGATTAAGGAAACGTGTTGCAACACGTTTGAAAGATTCTCAAAACACTTTTGCAATGCTGACCACATTCAATGAAGTTGATATgtaag-ttgtatgttacagtttgaattattttgat-tatagtca-gtattatctcatttttttgtccacttaatgtagctgcctttcattttagccaagtgcc
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162156510|gb|FC332118.1|FC332118
EST:     GATTCTCAGAACACTTTTGCATTGTTGACCACCTTCAACGAGATTGACAT                         GTCTAATCTGATGCAGATGCGCACTCAGCATAAGGATTTGTTTCAAGAGAA
genomic: GATTCTCAGAACACTTTTGCATTGTTGACCACCTTCAACGAGATTGACATgtaagattga ... ttgcatgcagGTCTAATCTGATGCAGATGCGCACTCAGCATAAGGATTTGTTTCAAGAGAA
EST: gi|162163854|gb|FC340076.1|FC340076
EST:     CATTGTTGACCACCTTCAACGAGATTGACAT                         GTCTAATCTGATGCAGATGCGCACTCAGCATAAGGATTTGTTTCAAGAGAA
genomic: CATTGTTGACCACCTTCAACGAGATTGACATgtaagattga ... ttgcatgcagGTCTAATCTGATGCAGATGCGCACTCAGCATAAGGATTTGTTTCAAGAGAA