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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCACTGTCTAAGCGGATACATTACGGCAAGTTCGTGGCAGAAGCGAAATTCACTGAGAATCCTGCGAAATTCGAGTGCCACATTAGGGCGCAGgtatagcacccgccctttgatattcccttctaagcataatcctagtagtgggtgtgttgagctgagttccaggatttgttgttacaccactcaatttcct...

Basic information

species Physcomitrella patens
transcript PP1S142_106V6.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S142_106V6.1 (Physcomitrella patens), 5'ss of exon 9
lower sequence: EDP00124 (Chlamydomonas reinhardtii), 5'ss of exon 6
GCACTGTCTAAGCGGATACATTACGGCAAGTTCGTGGCAGAAGCGAAATTCACTGAGAATCCTGCGAAATTCGAGTGCCACATTAGGGCGCAGgtatagcacccgccctttgatattcccttctaagcataatcctagtagtgggtgtgttgagctgagttccaggatttgttgttacaccactcaatttcct
|| ||||| ||||||||||| ||||||||||||||||| || || |||||| ||| || |   | |   |  |  ||     || | | |  ||| |     | | | |||| | | |        || |  | ||   ||||   |  |   ||   | ||  ||                           
GCGCTGTCGAAGCGGATACACTACGGCAAGTTCGTGGCGGAGGCCAAATTC-CTgtgagtggcgtgtgttgtgc-tggtgtgttggagtgttggtgtgtg--cgggcttttggtgtgct------ggcgtgttgctgaaagtgctggaat---gcccggatcaggg---------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162236155|gb|FC411963.1|FC411963
EST:     CGAAATTCACTGAGAATCCTGCGAAATTCGAGTGCCACATTAGGGCGCAG                         GATGGAGATGCAATAATGAGAGAATTAACCTTCAAAAACGTTGAAGACAAT
genomic: CGAAATTCACTGAGAATCCTGCGAAATTCGAGTGCCACATTAGGGCGCAGgtatagcacc ... tgtattacagGATGGAGATGCAATAATGAGAGAATTAACCTTCAAAAACGTTGAAGACAAT
EST: gi|162236154|gb|FC411962.1|FC411962
EST:     CGAAATTCACTGAGAATCCTGCGAAATTCGAGTGCCACATTAGGGCGCAG                         GATGGAGATGCAATAATGAGAGAATTAACCTTCAAAAACGTTGAAGACAAT
genomic: CGAAATTCACTGAGAATCCTGCGAAATTCGAGTGCCACATTAGGGCGCAGgtatagcacc ... tgtattacagGATGGAGATGCAATAATGAGAGAATTAACCTTCAAAAACGTTGAAGACAAT
EST: gi|162242780|gb|FC417550.1|FC417550
EST:     CGAAATTCACTGAGAATCCTGCGAAATTCGAGTGCCACATTAGGGCGCAG                         GATGGAGATGCAATAATGAGAGAATTAACCTTCAAAAACGTTGAAGACAAT
genomic: CGAAATTCACTGAGAATCCTGCGAAATTCGAGTGCCACATTAGGGCGCAGgtatagcacc ... tgtattacagGATGGAGATGCAATAATGAGAGAATTAACCTTCAAAAACGTTGAAGACAAT
EST: gi|162248950|gb|FC421150.1|FC421150
EST:     CGAAATTCACTGAGAATCCTGCGAAATTCGAGTGCCACATTAGGGCGCAG                         GATGGAGATGCAATAATGAGAGAATTAACCTTCAAAAACGTTGAAGACAAT
genomic: CGAAATTCACTGAGAATCCTGCGAAATTCGAGTGCCACATTAGGGCGCAGgtatagcacc ... tgtattacagGATGGAGATGCAATAATGAGAGAATTAACCTTCAAAAACGTTGAAGACAAT