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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTTCTACTTGAGTGGAATACTCTCAGTGTTCTTTTGTGGCATTGTAATGTCTCATTACACTTGGCATAATGTCACGGAAAATTCTCGAACCACAACCAGgtacgttccttcatgcctcttagcttcgatgttctatactagcgaacgaatggcaacatcaaatattcttgagactgatgcgtaatttcttggaggttggagttatgatactgatgcttgtcatcaacgtgacattaatgcactttggtgattcacag

Basic information

species Physcomitrella patens
transcript PP1S113_117V6.2
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S113_117V6.1 (Physcomitrella patens), 5'ss of exon 8
lower sequence: LOC_Os07g47100.2 (Oryza sativa), 5'ss of exon 9
TTTTCTACTTGAGTGGAATACTCTCAGTGTTCTTTTGTGGCATTGTAATGTCTCATTACACTTGGCATAATGTCACGGAAAATTCTCGAACCACAACCAGgtacgttccttcatgcctcttagcttcgatgttctatactagcgaacgaatggcaacatcaaatattcttgagactgatgcgtaatttcttggaggttggagttatgatactgatgcttgtcatcaacgtgacattaatgcactttggtgattcacag
|  |  | ||||| || || ||| | || ||||| ||||| ||||||||||| ||||||||||||||||| ||||| || | |||  ||   ||||| | |||  ||     ||   ||| |  ||| || |||||  ||    || || | ||    |||  |  |    | ||| |  |  || ||  |||    |   ||  |   ||    |                                          
TGCTAGATTTGAGCGGCATTCTCACCGTATTCTTCTGTGGTATTGTAATGTCACATTACACTTGGCATAACGTCACAGAGAGTTCAAGAGTTACAACAAAgtaaatt-----ataattctca--ttccatattcta--ctgtttaatgattagct---tcagttcgtagaaaaactaa-acaaaacttactggtttgttttgtcctttcacctcag------------------------------------------

upper sequence: PP1S113_117V6.1 (Physcomitrella patens), 5'ss of exon 8
lower sequence: LOC_Os05g05590.1 (Oryza sativa), 5'ss of exon 10
TTTTCTACTTGAGTGGAATACTCTCAGTGTTCTTTTGTGGCATTGTAATGTCTCATTACACTTGGCATAATGTCACGGAAAATTCTCGAACCACAACCAGgtacgttccttcatgcctcttagcttcgatgttctatactagcgaacgaatggcaacatcaaatattcttgagactgatgcgtaatttcttgg-aggttggagttatgatactgatgcttgtcatcaacgtgacattaatgcactttggtgattcacag
|  |  |  ||||||| || ||| | |||||||| | ||| || |||||||| |||||||||||||||||||| || ||||  ||| | |  || |||| ||| || |  || ||    | || ||   ||  | |  || | |      |    |    |||||||  ||       |   |   ||| ||  |   |  | | ||  ||| |                                             
TGCTAGATCTGAGTGGCATTCTCACTGTGTTCTTCTCTGGAATAGTAATGTCACATTACACTTGGCATAATGTGACAGAAAGCTCTAGGATTACTACCAAgtatgtactgtc-tgataatcagttttactgg-caacccttgtggtttcttttagatga-aaatatttatg-------tatatggcttcctgatattcttcattcattttacag---------------------------------------------

upper sequence: PP1S113_117V6.1 (Physcomitrella patens), 5'ss of exon 8
lower sequence: GRMZM2G063492_T01 (Zea mays), 5'ss of exon 10
TTTTCTACTTGAGTGGAATACTCTCAGTGTTCTTTTGTGGCATTGTAATGTCTCATTACACTTGGCATAATGTCACGGAAAATTCTCGAACCACAACCAGgtacgttccttcatgcctcttagcttcgatgttctatactagcgaacgaa-tggcaacatcaaatattcttgagactgatgcgtaatttcttggaggttggagttatgatactgatgcttgtcatcaacgtgacattaatgcactttggtgattcacag
| ||  || |||||||||| ||  | || ||||| ||||| || |||||||| |||||||||||||||||||| || |||| |||| |    || |||| ||| ||   |||  |  ||  || ||   |     | | ||  |  |  | |    |||| |  ||| ||     |||||      ||||    | |||| ||                                                        
TGTTGGACCTGAGTGGAATTCTTACTGTCTTCTTCTGTGGAATAGTAATGTCACATTACACTTGGCATAATGTGACAGAAAGTTCTAGGGTTACCACCAAgtatgtcttttctggattc--agtttttctagcaaaaattatggttcttacttcttacattatgtatactaattgctgattttctctttcc---atgttgcag--------------------------------------------------------

upper sequence: PP1S113_117V6.1 (Physcomitrella patens), 5'ss of exon 8
lower sequence: GLYMA20G37370.1 (Glycine max), 5'ss of exon 10
TTTTCTACTTGAGTGGAATACTCTCAGTGTTCTTTTGTGGCATTGTAATGTCTCATTACACTTGGCATAATGTCACGGAAAATTCTCGAACCACAACCAGgtacgttccttcatgcctcttagcttcgatgttc-tatactagcgaacgaatggcaacatcaaatattcttgagactgatgcgtaatttcttggaggttggagttatgatactgatgcttgtcatcaacgtgacattaatgcactttggtgattcacag
| | |||  ||||||| || ||| | || ||||||||||| ||||| ||||||||||| || ||||||||||| || || | |||  ||| ||| |||| ||| ||    | |      ||      ||| | |  | |||  | ||      |||     ||| ||  ||     | || |   |  ||||| ||                                                               
TGTCCTATCTGAGTGGCATTCTCACTGTATTCTTTTGTGGGATTGTCATGTCTCATTATACCTGGCATAATGTGACTGAGAGTTCAAGAATCACTACCAAgtatgtcttctaaatagatttcctcaagatatacgcacactgtccaagtctatgcatacctaaacatattt----ttcatcc---aactcttgcag---------------------------------------------------------------

upper sequence: PP1S113_117V6.1 (Physcomitrella patens), 5'ss of exon 8
lower sequence: GLYMA19G42900.1 (Glycine max), 5'ss of exon 9
TTTTCTACTTGAGTGGAATACTCTCAGTGTTCTTTTGTGGCATTGTAATGTCTCATTACACTTGGCATAATGTCACGGAAAATTCTCGAACCACAACCAGgtacgttccttcatgcctcttagcttcgatgttctatactagcgaacgaatggcaacatcaaatattcttgagactgatgcgtaatttcttggaggttggagttatgatactgatgcttgtcatcaacgtgacattaatgcactttggtgattcacag
| |  ||  ||||||| || ||  | || ||||| ||||| ||||| ||||||||||| |||||||||||||| || || |  ||  |||  || |||| |||  | |  |      ||||       | ||| ||||       |     |        |   |  ||   | || ||  |  |||| ||  |  |||  ||||                                                     
TATGGTATCTGAGTGGCATTCTTACTGTATTCTTCTGTGGGATTGTTATGTCTCATTATACTTGGCATAATGTGACTGAGAGCTCGAGAATAACTACCAAgtatatcctctagacattcttcaagctaa-gttatatatggatctatttgggttgggggtagtaacact---gtctaatttg--atttattaaaacttgttgttacag--------------------------------------------------

upper sequence: PP1S113_117V6.1 (Physcomitrella patens), 5'ss of exon 8
lower sequence: GLYMA03G40290.1 (Glycine max), 5'ss of exon 9
TTTTCTACTTGAGTGGAATACTCTCAGTGTTCTTTTGTGGCATTGTAATGTCTCATTACACTTGGCATAATGTCACGGAAAATTCTCGAACCACAACCAGgtacgttccttcatgcctcttagcttcgatgttctatactagcgaacgaatggcaacatcaaatattcttgagactgatgcgt-aatttcttggaggttggagttatgatactgatgcttgtcatcaacgtgacattaatgcactttggtgattcacag
| |  ||  ||||||| || ||| | || ||||| ||||| ||||| ||||||||||| |||||||||||||| || || |  ||  |||  || |||| |||  | |  | |      ||      | |   ||||| ||  || | | | |    |  ||  | | |  |   ||||   | ||  |  | |  |||  ||                                                        
TATGGTATCTGAGTGGCATTCTCACTGTATTCTTCTGTGGGATTGTTATGTCTCATTATACTTGGCATAATGTGACTGAGAGCTCGAGAATAACTACCAAgtatatcctctaaacaaatttcttcaagctaagctata-tatggatctatttggggtagtaa-cactgtctaatttgatatattaaactacttgctgttacag--------------------------------------------------------

upper sequence: PP1S113_117V6.1 (Physcomitrella patens), 5'ss of exon 8
lower sequence: AT3G05030.2 (Arabidopsis thaliana), 5'ss of exon 6
TTTTCTACTTGAGTGGAATACTCTCAGTGTTCTTTTGTGGCATTGTAATGTCTCATTACACTTGGCATAATGTCACGGAAAATTCTCGAACCACAACCAGgtacgttccttcatgcctcttagcttcgatgttctatactagcgaacgaatggcaacatcaaatattcttgagactgatgcgtaatttcttggaggttggagttatgatactgatgcttgtcatcaacgtgacattaatgcactttggtgattcacag
| |||  ||||||||| || ||  | || || || ||||| ||||| ||||| |||||||||||||| |||||||| || |  ||  |||  || |||| |||         ||      |  | || || ||||   || |  ||| |||   ||  |     ||  |  | |||  | | || |||||  |   ||      |||| || |                                             
TATTCGCCTTGAGTGGTATCCTAACTGTATTTTTCTGTGGGATTGTGATGTCCCATTACACTTGGCACAATGTCACCGAGAGCTCAAGAATTACTACCAAgta---------ata-----tgacctccattttct---cttgaaaacaaattcaaatgttttccatcttcaatact--tacttactttctatgcatttacg---atgagacag---------------------------------------------

upper sequence: PP1S113_117V6.1 (Physcomitrella patens), 5'ss of exon 8
lower sequence: Vv14s0128g00020.t01 (Vitis vinifera), 5'ss of exon 9
TTTTCTACTTGAGTGGAATACTCTCAGTGTTCTTTTGTGGCATTGTAATGTCTCATTACACTTGGCATAATGTCACGGAAAATTCTCGAACCACAACCAGgtacgttccttcatgcctcttagcttcgatgttctatactagcgaacgaatggcaacatcaaatattcttgagactgatgcgtaatttcttggaggttggagttatgatactgatgcttgtcatcaacgtgacattaatgcactttggtgattcacag
|||| |   ||||||| ||  |  |||| ||||| ||||||||||| ||||| |||||||| ||||||||||| || ||||  || ||||  ||||||| ||  |||     |||  | | ||  | |  | |  ||| |||     |  |||  | |       || |  | | |||   ||  |       ||  || ||  |||||   |                                             
TTTTATCTCTGAGTGGGATTTTAACAGTTTTCTTCTGTGGCATTGTCATGTCGCATTACACATGGCATAATGTTACCGAAAGCTCGCGAATAACAACCAAgtgagttt----atgattttgagtatag--gatacata-tagtacttgtgtggtgatac------ttatgaacagtgaattgttttcatccacagcctgtagaaatgattaag---------------------------------------------

upper sequence: PP1S113_117V6.1 (Physcomitrella patens), 5'ss of exon 8
lower sequence: Vv05s0020g01960.t01 (Vitis vinifera), 5'ss of exon 10
TTTTCTACTTGAGTGGAATACTCTCAGTGTTCTTTTGTGGCATTGTAATGTCTCATTACACTTGGCATAATGTCACGGAAAATTCTCGAACCACAACCAGgtacgt---tccttcatgcctcttagcttcgatgttctatactagcgaacgaatggcaacatcaaatattcttgagactgatgcgtaatttcttggaggttggagttatgatactgatgcttgtcatcaacgtgacattaatgcactttggtgattcacag
| ||||| || ||||  || ||| | ||||||||||| || ||||| |||||||| ||||| ||||||||||| || |||| |||  ||   || |||| ||| ||   |  | || |      ||  | ||  |||  |  |    |    ||     ||  |||| ||  | | ||||     | || |    || |||  |||| | |  |  ||| |||                                      
TGTTCTATTTAAGTGCCATTCTCACTGTGTTCTTTTGCGGGATTGTCATGTCTCACTACACATGGCATAATGTGACTGAAAGTTCAAGAGTGACTACCAAgtatgttaattatccaggaagtgaagtattgaaattcattcatcttcattccattttgcca--aaatgttgattaaactg-----tgatgttgctgatgttacagttcttac-caaatgtttgcag-----------------------------------

upper sequence: PP1S113_117V6.1 (Physcomitrella patens), 5'ss of exon 8
lower sequence: EFJ05720 (Selaginella moellendorffii), 5'ss of exon 8
TTTTCTACTTGAGTGGAATACTCTCAGTGTTCTTTTGTGGCATTGTAATGTCTCATTACACTTGGCATAATGTCACGGAAAATTCTCGAACCACAACCAGgtacgttccttcatgcctcttagcttcgatgttctatactagcgaacgaatggcaacatcaaatattcttgagactgatgcgtaatttcttggaggttggagttatgatactgatgcttgtcatcaacgtgacattaatgcactttggtgattcacag
| |||||| ||||||| || ||| |||| ||||||||||||||||| ||||| ||||| || ||||| || |||||||| |  ||  ||| |||||||| ||||  |     ||   | |    |    |    ||| |  ||                                                                                                                   
TGTTCTACCTGAGTGGGATCCTCACAGTCTTCTTTTGTGGCATTGTTATGTCACATTATACATGGCACAACGTCACGGAGAGCTCAAGAATCACAACCAAgtacagtgacaaatctgtatcttatgttttaacttattcctgcag-----------------------------------------------------------------------------------------------------------------