Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTAGTGGCTACAGATCATGCCCCTTTCAATTCAACTCAGAAGGCGCTTGGAAAGCATGACTTTCGGGTGATTCCTAATGGTGTTAATGgtaattattagtggccattcaaatttgagtacatgtagatgcgctgacactttctattgttagagtttagaattcgttctcttgcaattctttcagttggtgcgtatagcagttgaatgattaccattagcacagttagggtacttgcaagagttgatgagatgtggatctgacaacacaacgtctgcttctgatgtcag

Basic information

species Physcomitrella patens
transcript PP1S101_168V6.2
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S101_168V6.1 (Physcomitrella patens), 5'ss of exon 9
lower sequence: LOC_Os01g59340.2 (Oryza sativa), 5'ss of exon 12
TTAGTGGCTACAGATCATGCCCCTTTCAATTCAACTCAGAAGGCGCTTGGAAAGCATGACTTTCGGGTGATTCCTAATGGTGTTAATGgtaattattagtggcc----attcaaatttgagtacatgtagatgcgctgacactttctattgttagagtttagaattcgttctc--ttgcaattctttcagttggtgcgtatagcagttgaatgattaccattagcacagttagggtacttgcaagagttgatgagatgtggatctgacaacacaacgtctgcttctgatgtcag
 | || |  || ||||||  | | ||||| || || ||||| ||  | ||     |||| ||  |   |||||||||||||||||||||||||  ||   ||      |||  ||  |    | ||    ||        |||||  ||| |   ||    ||||||||  |   ||  |||     ||| |   || | |  |  || || | ||  |   ||                                                                      
CTTGTAGGAACTGATCATTGCACCTTCAACTCCACACAGAAAGCTTTCGGCTCTGATGATTTCAGAAAGATTCCTAATGGTGTTAATGgtaatccttgtgggttgtgaatttcaacgttgacaaataagtatataaaagaacttttgattttataag----gaattcgtgtttggtttgaataaacccagctaaggcatctctctcttaaacgcttgaccccag----------------------------------------------------------------------