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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGGCCAAGCATGTGTACACCGAAGCCAAGCGGGTACATGATTTTCGAGCTGTAACTGTGCAATCTGAAAGgtactctcattgcctatttttgaacttacgttgtgtgagtgagggtttttcgtagaacgaaatttcccaactttcattttatgctaaatttacctttacgtatgcgactcaatagccctaaccatgagattgagtgtggtgcag

Basic information

species Physcomitrella patens
transcript PP1S89_154V6.1
intron # 8
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162189012|gb|FC365130.1|FC365130
EST:     GAAGCCAAGCGGGTACATGATTTTCGAGCTGTAACTGTGCAATCTGAAAG                         CGAGGAGTCAGTTATGAAGAGGTTAGGGGAGCTCATGAACGAGAGCCATGC
genomic: GAAGCCAAGCGGGTACATGATTTTCGAGCTGTAACTGTGCAATCTGAAAGgtactctcat ... tgtggtgcagCGAGGAGTCAGTTATGAAGAGGTTAGGGGAGCTCATGAACGAGAGCCATGC
EST: gi|208388403|gb|DC957041.1|DC957041
EST:     GAAGCCAAGCGGGTACATGATTTTCGAGCTGTAACTGTGCAATCTGAAAG                         CGAGGAGTCAGTTATGAAGAGGTTAGGGGAGCTCATGAACGAGAGCCATGC
genomic: GAAGCCAAGCGGGTACATGATTTTCGAGCTGTAACTGTGCAATCTGAAAGgtactctcat ... tgtggtgcagCGAGGAGTCAGTTATGAAGAGGTTAGGGGAGCTCATGAACGAGAGCCATGC
EST: gi|162272814|gb|FC448802.1|FC448802
EST:     GAAGCCAAGCGGGTACATGATTTTCGAGCTGTAACTGTGCAATCTGAAAG                         CGAGGAGTCAGTTATGAAGAGGTTAGGGGAGCTCATGAACGAGAGCCATGC
genomic: GAAGCCAAGCGGGTACATGATTTTCGAGCTGTAACTGTGCAATCTGAAAGgtactctcat ... tgtggtgcagCGAGGAGTCAGTTATGAAGAGGTTAGGGGAGCTCATGAACGAGAGCCATGC
EST: gi|208385544|gb|DC956700.1|DC956700
EST:     GAAGCCAAGCGGGTACATGATTTTCGAGCTGTAACTGTGCAATCTGAAAG                         CGAGGAGTCAGTTATGAAGAGGTTAGGGGAGCTCATGAACGAGAGCCATGC
genomic: GAAGCCAAGCGGGTACATGATTTTCGAGCTGTAACTGTGCAATCTGAAAGgtactctcat ... tgtggtgcagCGAGGAGTCAGTTATGAAGAGGTTAGGGGAGCTCATGAACGAGAGCCATGC