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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACACCTAATCCAGAATGCGCGAGTTTGGATACGACTTTGGTGGATGCACTGCATACAATGCACGATGGGAAATTCCTCCATCTTCCTGTTAAAGATCGTGgtacatacgctgctcccctgttctgtgttttgtagtgttattgggagtatattagttgcaggtgtgatcgggtcgtccttcttcggtgtctgaggtcttc...

Basic information

species Physcomitrella patens
transcript PP1S87_48V6.4
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S87_48V6.4 (Physcomitrella patens), 5'ss of exon 8
lower sequence: GLYMA08G00560.3 (Glycine max), 5'ss of exon 8
ACACCTAATCCAGAATGCGCGAGTTTGGATACGACTTTGGTGGATGCACTGCATACAATGCACGATGGGAAATTCCTCCATCTTCCTGTTAAAGATCGTGgtacatacgctgctcccctgttctgtgttttgtagtgttattgggagtatattagttgcaggtgtgatcgggt-cgtccttcttcggtgtctgaggtcttc
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ACTCCAAACCCAGATTGTGCATCAATAGATACAACGATACTGGATGCACTGCATATGATGCATGATGGGAAATTCTTACATCTTCCTGTGGTAGACAAAGgta-acatttacttttccaattttgtag---gcagtctcctaattcttatattt-ttgtactgactactgagtgctgacttttattgtttatgcag-----