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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATAACGTTCGCCCATGTCTATTACATGGTGACCTCTGGAGCGGCAATGTTGCCACGGATGCAAAAGGATCCCCCGTAGTACTTGATCCTGCATGTTATTgtgagtaaatattgcattgaacttatttgcccctactcagttggtgcttatactgagatttgttgccattttaggcattttagtgaaacctcacctaatacattcaatcagagaagctaatgtttcattctctacgaccag

Basic information

species Physcomitrella patens
transcript PP1S83_158V6.1
intron # 8
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208396828|gb|DC920424.1|DC920424
EST:     TGCCACGGATGCAAAAGGATCCCCCGTAGTACTTGATCNTGCATGTTATT                         ATGGGCACAATGAAGCGGAGTTTGGAATGTCATGGTGCGCAGGGTTTGGCC
genomic: TGCCACGGATGCAAAAGGATCCCCCGTAGTACTTGATCCTGCATGTTATTgtgagtaaat ... ctacgaccagATGGGCACAATGAAGCGGAGTTTGGAATGTCATGGTGCGCAGGGTTTGGCC
EST: gi|18333323|gb|BJ165337.1|BJ165337
EST:     TGCCACGGATGCAAAAGGATCCCCCGTAGTACTTGATCCTGCATGTTATT                         ATGGGCACAATGAAGCGGAGTTTGGAATGTCATGGTGCGCAGGGTTTGGCC
genomic: TGCCACGGATGCAAAAGGATCCCCCGTAGTACTTGATCCTGCATGTTATTgtgagtaaat ... ctacgaccagATGGGCACAATGAAGCGGAGTTTGGAATGTCATGGTGCGCAGGGTTTGGCC
EST: gi|162187661|gb|FC364105.1|FC364105
EST:     TGCCACGGATGCAAAAGGATCCCCCGTAATACTTGATCCTGCATGTTATT                         ATGGGCACAATGAAGCGGAGTTTGGAATGTCATGGTGCGCAGGGTTTGGCC
genomic: TGCCACGGATGCAAAAGGATCCCCCGTAGTACTTGATCCTGCATGTTATTgtgagtaaat ... ctacgaccagATGGGCACAATGAAGCGGAGTTTGGAATGTCATGGTGCGCAGGGTTTGGCC
EST: gi|37838919|gb|BJ596927.1|BJ596927
EST:     TGCCACGGATGCAAAAGGATCCCCCGTAGTACTTGATCCTGCATGTTATT                         ATGGGCACAATGAAGCGGAGTTTGGAATGTCATGGTGCGCAGGGTTTGGCC
genomic: TGCCACGGATGCAAAAGGATCCCCCGTAGTACTTGATCCTGCATGTTATTgtgagtaaat ... ctacgaccagATGGGCACAATGAAGCGGAGTTTGGAATGTCATGGTGCGCAGGGTTTGGCC