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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTGGATTCAGATCACGATTTTTTAATAGACAAAGATGATCTCCTTCGATATGGAAATCATGCTCTCACCTACCGAATCGTAGAGCGTATCTTTTCCCAGgtgcattttaatgttgatctttgtcgaagccaaccttattagcgcttgacttgttcctctgtgattaaatatgaaagggttactatatctagtttaggaa...

Basic information

species Physcomitrella patens
transcript PP1S7_163V6.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S7_163V6.2 (Physcomitrella patens), 5'ss of exon 8
lower sequence: GLYMA10G30930.1 (Glycine max), 5'ss of exon 8
GCTGGATTCAGATCACGATTTTTTAATAGACAAAGATGATCTCCTTCGATATGGAAATCATGCTCTCACCTACCGAATCGTAGAGCGTATCTTTTCCCAGgtgcattttaatgttgatctttgtcgaagccaaccttattagcgcttgacttgttcctctgtgattaaatatgaaagggttactatatctagtttaggaa--------------------------------------------------------------------------------------
||||||| ||||||||||||| ||||||||||||||  ||||  |  ||||||| || ||||| || ||||| ||||| || ||  | || ||||| |||||   | |  ||     |  |||| |   |   | ||   |         || |  ||     |  | |    | |    |  | | ||||    | |||                                                                                      
GCTGGATACAGATCACGATTTCTTAATAGACAAAGAGAATCTTATCAGATATGGTAACCATGCGCTTACCTATCGAATTGTTGATAGAATATTTTCTCAGgtttgtgtggat-----tacttgttgcttctgtctttgagatttaactgtttctgacttcagcaacagaccctataccccttttctttctaacgcaagaagtgtttggttcagtgtccattcatttttttttatcagatcattttatagaagatgcagattctgacttgctttattattgtctcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162155853|gb|FC332402.1|FC332402
EST:     ATGGAAATCATGCTCTCACCTACCGAATCGTAGAGCGTATCTTTTCCCAG                         GTTCCAAGAAAGTTCACCAGCAAAGTAGCTGGAAAGATGGGTTATGAAGAC
genomic: ATGGAAATCATGCTCTCACCTACCGAATCGTAGAGCGTATCTTTTCCCAGgtgcatttta ... tggattttagGTTCCAAGAAAGTTCACCAGCAAAGTAGCTGGAAAGATGGGTTATGAAGAC
EST: gi|162261177|gb|FC437506.1|FC437506
EST:     ATGGAAATCATGCTCTCACCTACCGAATCGTAGAGCGTATCTTTTCCCAG                         GTTCCAAGAAAGTTCACCAGCAAAGTAGCTGGAAAGATGGGTTATGAAGAC
genomic: ATGGAAATCATGCTCTCACCTACCGAATCGTAGAGCGTATCTTTTCCCAGgtgcatttta ... tggattttagGTTCCAAGAAAGTTCACCAGCAAAGTAGCTGGAAAGATGGGTTATGAAGAC